Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01822 ATGGCTCCCACTGACAACAGATCCAACCATGTATCCGGGTCTAATTCGACCCGTTTGGACAAGGAGATCCGATACCGCGGGGTCAGGAAGAGACCGTGGGGCCGCTACGCCGCCGAGATCCGGGACCCCGGGAAGAAGACACGCGTCTGGCTCGGCACCTTCGACACCGCGGAGGAGGCCGCGCGTGCGTATGATACGGCGGCGCGTGATTTCCGCGGCGCGAAGGCCAAGACGAATTTTCCCACGCACGCGGAACTTACCCACCTGGCGCGTAGCCCCAGCCAGAGCAGCACCCTCGAGTCCCCGTCTCCGCCGCCGCTCGACCTCACTCTCACCCCACTCGCTTCCTCCGGCGCGTTCGTCTTCCCCGTCGCCCGCCCCGTGGTTTTCTTCGACGCGTTCGCGCGTGCGGAGGTGCGCGCTTTCGATCTTCCCGTGACAGCGTTCCGCCGCACCGCCGCCGCCGCCGTTAGCCAGAGTGAATCCGACTCGTCCTCCGTCGTAGACTATGAGCGGGTCCCACATGGGAGAGTGTTGGATCTCGACCTCAATGTTTCTCCTCCGCCCGAGGTTGCATGA 579 0.6494 MAPTDNRSNHVSGSNSTRLDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTHAELTHLARSPSQSSTLESPSPPPLDLTLTPLASSGAFVFPVARPVVFFDAFARAEVRAFDLPVTAFRRTAAAAVSQSESDSSSVVDYERVPHGRVLDLDLNVSPPPEVA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01822 192 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Phco9g01822 192 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Phco9g01822 192 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Phco9g01822 192 MobiDBLite consensus disorder prediction 1 16 - -
Phco9g01822 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 169 - -
Phco9g01822 192 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Phco9g01822 192 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01822 Phco-Chr9 42485292 42485870 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phco9g01822 AP2 2.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01822 9 42485292 42485870 Phco11g00437 11 2945739 2946551 ECH
Phco9g01822 9 42485292 42485870 Phco9g01822 9 42485292 42485870 ECH