Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01784 ATGGATCTGACTAAAAAGCGCAAGCTTGATGAGAACGGTTTCGGTGATTCTGACCCGCTTAAACTCTCTCCCTCCGAGGCGCGTAAGCTCATCGAGCGCTTCACCCCGGAGCAGCTCCTCGACATCCTCCAGGATGCGGTGGCGCGCCACGCCGACGTGCTCGCCTCCGTGCGCGCCGTTGCGGACCCCGATGTGTCGCAGCGGAAACTCTTCGTACGCGGCCTCGGGTGGGACACTACCACCGACGGGCTCCGTTCGCTTTTCTCCGCCTACGGCGAGCTTGAGGAGGCTGTTGTGATCGTCGACAAGGCAACCGGCAAGTCCAAGGGCTACGGTTTCGTCACCTTCCGTCACGTGGACGGTGCCATCCTCGCCCTGCGCGAACCCAGCAAGCGCATCGACGGGCGAGTGACCGTCACTCAGCTCGCTGCCGCGGGAAACTCCGCGTCAAACGCCAACGCTGCTGATGTCGCGCTAAGGAAGATCTACGTCGCCAACGTGCCGCCGGACCTACCTGCTGATAAGCTCCTCGCGCATTTTTCTGTGTATGGAGAGATCGAAGAGGGACCGTTAGGGTTTGATAAACAAACTGGAAAATCAAAGGGGTTTGCGCTTTTTGTTTACAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTGAAGACTGTGGAAGGAAGGCAATTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGGAAGCGAGCCGGACCAGATTCGGGTCAGGCCCATGGGAATGTTCAGCACGGTCATGGGGATGGAGTGGGGGCTGGAATGGGGATGCCTCCTGCGGCGGGGTCTGGACCGGGGCAGTATGGCGGTCCGCAGTATGGAGGACCGGTTGGGTTGGGTTCGTATGGTGGGTTTGGTGGACAGCCTCCGTTGGGTAACCATAATCATCCTCTGAATTCGTCAAACCCCGTACCCGGTTCAATGGCGGGTGCTGGAGGATACGGTGCTGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGCTCGACGGGCTTTGGTGCTGCAGGTGGGCGGTGGAGGATATCCGGAGGGTGGTCATTATGGTTTATCAGCTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCCGGTGCTTCTCCTGTGCCTAG 1152 0.5903 MDLTKKRKLDENGFGDSDPLKLSPSEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSAYGELEEAVVIVDKATGKSKGYGFVTFRHVDGAILALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVGLGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSTGFGAAGGRWRISGGWSLWFISFGWIPEPASSSFRCFSCA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01784 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Phco9g01784 383 MobiDBLite consensus disorder prediction 1 15 - -
Phco9g01784 383 SMART rrm1_1 161 233 IPR000504 GO:0003723
Phco9g01784 383 SMART rrm1_1 69 141 IPR000504 GO:0003723
Phco9g01784 383 PANTHER GEO13361P1-RELATED 52 309 - -
Phco9g01784 383 FunFam UBP1-associated protein 2C isoform A 153 301 - -
Phco9g01784 383 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Phco9g01784 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Phco9g01784 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Phco9g01784 383 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Phco9g01784 383 MobiDBLite consensus disorder prediction 1 21 - -
Phco9g01784 383 MobiDBLite consensus disorder prediction 238 317 - -
Phco9g01784 383 Gene3D - 149 301 IPR012677 -
Phco9g01784 383 Gene3D - 59 148 IPR012677 -
Phco9g01784 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Phco9g01784 383 FunFam UBP1-associated protein 2C isoform A 51 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01784 Phco-Chr9 41840077 41841347 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01784 9 41840077 41841347 Phco9g01784 9 41840077 41841347 ECH