Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01736 ATGGAATCCCCGTCTTCGAACGGATCGGTTGCGAAGCGTTCGCTGAGGAGGAAAGTGAATTTGAGGAGCTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAATTGGGGGGTGGCTTGAAGAAGAAGAGTAGGACCAAAGAGGATTTGGAGAAGGAGACTGAGACTGAGGCTATGATTGCGATGTCGCTTGGTTTCCCTATTGATGCTTTGCTTGAGGAGGAGGTTAGGGCTGGGGTTGTGAGGCAGTTGGGTGGGAAGGAGCAGAATGATTACATAGTGATAAGGAATCATATATTGGCTCTGTGGAGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAAGGGATGATTAGAGAAACTGTGAGCAATGAGTATGAGCATTTGATTAATTCTGCTTACGATTTCCTTTTGTATAATGGCTACATAAATTTTGGGGTTTCACCGGCATTTACTTCTCAATTGCCTGAGTCTAATGAGGGGACTGCTGTTGTTATTGGAGCTGGCCTGGCAGGGTTGGCAGCAGCGAGGCAGCTGTTGTCGTTCGGTTACAAGGTGGTGGTTTTGGAAGGCAGAAATCGGCCTGGTGGGCGAGTTTATACTCAGAAGGTAGGGCGCGAGGGAAAATTTTCTGCCATTGATCTTGGTGGGAGTATCATCACTGGCATTCATGCTAACCCTTTGGGAGTTCTGGCTCGACAACTTTCTATACCACTTCATAAAGTCAGAGATAATTGCCCTTTATATAAGCCAAATGGGGCACCGGTTGATACAGAAATGGATGCAAGCGTTGAATTTGTATTTAATAGGTTGCTTGACAAGGTTATGGAGCTAAGGCAAATCATGGGTGGGTTTGCAAGTGATACCTCACTTGGTTCGGTCTTGGAGACTCTTAGGAAATTGTATAGCGTGACCAGAAGTACTGATGAGAGGCAGTTGCTTGATTGGCATCTTGCAAATTTGGAATACGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCGTATGAGATGAGTGGTGATCACTGCTTTCTTGCTGGAGGGAATACAAGGTTGATAAAAGCTCTATGTGAAGGAGTTCCTATTTTTTATGGAAAGACTGTGAATACTATCAGATATGGGAACGAGGGTGTTGAGGTCATTGCTGGGGACCAAGTCTTTCAAGCAGATATTGCCTTATGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGGCCATCAGTTTTGAACCTGAATTACCTGAAAGGAAACTGGCAGCAATTGACAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTTATGTATTTTGGGGGGAGGATCAAGACACATTTGGATGTCTCAATGAATATAGTCATCAACGTGGGGAGTTTTTCCTATTTTACTGTTACCACACAGTTTCCGGAGGCCCAGCACTTGTTGCGCTGGTGGCTGGTGAAGCCGCACAAGTCTTTGAATCCACAAATCCTTCCATTTTGCTCCATCGCGTTTTGACTGTTTTAAAAGGGATATTTCATCCTAAAGGCATTATTGTGCCTGATCCAATTCAGTCAATTTGTACGAGATGGGGAAGTGATCCCCTTTCTTATGGTTCCTACTCTCATGTTAGTGTGCATTCATCTGGTGATGATTATGATATACTAGCCGAAAGCGTGGGAAACAGACTGTTCTTCGCTGGTGAGGCTACAAGCAGGCAGTATCCAGCAACGATGCATGGTGCTTTCTTGAGTGGCTTAAGGGAAGCTTCACGCATATACAGATTTTCACGTCTGCAAAACAATACTAAGAAATATATGCCTAAGAATATTGGACCAAACCATGATATACTGCTTGAATTATTTAAGAAGCCTGATTTTGAATGTGGGAAATTTGCTTTCATTTTTTATTCTTCATCAGAGAGCCTGCCTTCAATGGGGCTTCTTCAAGTAACTTTTGGTGACACCGAACAGAGTTATGAGGAGCTGTTAAACAACTACCAGAATTCAACTAAGTGGCCATTGCAGCTGTACACTGTACTATCCCGGGAACAAGCGCAGCAGCTACAACTAGTTGAGGGAGGGGATGAAAGCAGGCTATCATTTTTGGTCAAAAGCCTTGGCTTGAAGCTCATGGGACCAAGTGCCTTGTTTTCAGCAGGTAATACATTAGTAGCTAACATTGCGTATTCTCGAAAAGGCCGTGGGAGGAACCGCTTAATTACTTGTTAA 2235 0.4434 MESPSSNGSVAKRSLRRKVNLRSYDEDLMDELFEKQLGGGLKKKSRTKEDLEKETETEAMIAMSLGFPIDALLEEEVRAGVVRQLGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLYNGYINFGVSPAFTSQLPESNEGTAVVIGAGLAGLAAARQLLSFGYKVVVLEGRNRPGGRVYTQKVGREGKFSAIDLGGSIITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDTEMDASVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLRKLYSVTRSTDERQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNTRLIKALCEGVPIFYGKTVNTIRYGNEGVEVIAGDQVFQADIALCTVPLGVLKKKAISFEPELPERKLAAIDRMGFGLLNKVAMVFPYVFWGEDQDTFGCLNEYSHQRGEFFLFYCYHTVSGGPALVALVAGEAAQVFESTNPSILLHRVLTVLKGIFHPKGIIVPDPIQSICTRWGSDPLSYGSYSHVSVHSSGDDYDILAESVGNRLFFAGEATSRQYPATMHGAFLSGLREASRIYRFSRLQNNTKKYMPKNIGPNHDILLELFKKPDFECGKFAFIFYSSSESLPSMGLLQVTFGDTEQSYEELLNNYQNSTKWPLQLYTVLSREQAQQLQLVEGGDESRLSFLVKSLGLKLMGPSALFSAGNTLVANIAYSRKGRGRNRLITC 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01736 744 Gene3D - 164 593 IPR036188 -
Phco9g01736 744 SUPERFAMILY FAD/NAD(P)-binding domain 162 596 IPR036188 -
Phco9g01736 744 Gene3D - 57 156 IPR036388 -
Phco9g01736 744 ProSiteProfiles SWIRM domain profile. 52 154 IPR007526 GO:0005515
Phco9g01736 744 Gene3D - 245 550 - -
Phco9g01736 744 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Phco9g01736 744 Pfam SWIRM domain 70 145 IPR007526 GO:0005515
Phco9g01736 744 FunFam Lysine-specific histone demethylase 1A 57 158 - -
Phco9g01736 744 Pfam Flavin containing amine oxidoreductase 170 594 IPR002937 GO:0016491
Phco9g01736 744 PANTHER FLAVIN MONOAMINE OXIDASE 164 597 - -
Phco9g01736 744 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01736 Phco-Chr9 41065120 41071909 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Phco9g01736 Amino_oxidase 3e-89 CL0063