Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01720 ATGCCTTCCCTCTCCATTTCCAGCGACCACAATTTGTCGTTGTTCAACCCGCCGACATTCTCCGACTTGGGAACCCATAAAGATCATCTTGAAGAGTTGCCACCGAAGAGGGTGGCGAGGAGTTGCCGCCAAGGAATCTCCCTCTCCATGGAAAGAGATGGAGAAATAGAAATGGATCTTCTGTTGAACGCGTATTCGAATGTCTCAGACGACGAAGAGCAACCCAAACGACAGAGATTATCACACTCTTCCTCTAATCCGCCAAAACGACACCTTCCTCCACCTTCTCCTCCTTTAATCCACCAAAAGCAACCTCCTATTCCCGGAAGTTACATTTCAAAACGACAACGCGCTCTGATGGGTCCCACCCCTTCCCCTCTTCCTGAGCCGGTTCCTGTTCTTTCTCCGTTCACGCTATCAGGTAGTATCTCAGTTGCTGATATACATCATAATATTTTGTCGTTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGCCAGAATCTGATATCTGAAAAGCTATCTACAACTTTATCCGGGCATACTAATGCAGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGATCACACAATTTGCGTATGGAATGTATGGAGCAGAAATCAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTTCTACTTTCTTGTGGATATGATTGCACATCACGGTTGGTCGATGTTGAAAAGGGAATGGAGACTCAGGTTTTCAGTGAAGATCAAATTGTTGCAGTTATAAAGTTCCATCCAGACAATTCAAATATCTTCCTTTCTGGAGGTTCAAAGGGCCATATCAAATTATGGGATGTCAGAACTGGCAAAGCAGTGCATCATTATAATAGAAACTTAGGCCCGATTCTCGATCTTGAGTTCACAAGGAATGGGAAGGAATTCATTTCTTCTTGTGATGTATCTCAGAGTAATATAAGTGAGAACGCTATTATTGTTTGGGATGTGTCAAGGGAGGTACCATTGTCTAATCAGGTTTATGCAGAAGCTTATACATGTCCTTGCTTGAGGCTCCACCCATTTGATTCAATCTTTGTTGCTCAGTCAAATGGAAATTATGTTGCGATCTTTACTGCCACCCCACCTTACAGACTCAACAAATATAAGCGATATGAGGGCCATGTGATCTCTGGGTTCCCAATCAAGTGCAATTTCAGCTTAGATGGGAAAAAACTCGCTTCTGGCTCTTCAGATGGCTCTATCTACCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGACCAAGCATGCATAGATGTTGCCTTCCACCCCATTATACCTAATGTTATTGCTTCATGCTCGTGGGATGGAAGTATTTTGGTATTTGAGTAG 1437 0.4322 MPSLSISSDHNLSLFNPPTFSDLGTHKDHLEELPPKRVARSCRQGISLSMERDGEIEMDLLLNAYSNVSDDEEQPKRQRLSHSSSNPPKRHLPPPSPPLIHQKQPPIPGSYISKRQRALMGPTPSPLPEPVPVLSPFTLSGSISVADIHHNILSLLKSKAKGHQSQNLISEKLSTTLSGHTNAVNAIHWSSTHAHLLASAGMDHTICVWNVWSRNQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGMETQVFSEDQIVAVIKFHPDNSNIFLSGGSKGHIKLWDVRTGKAVHHYNRNLGPILDLEFTRNGKEFISSCDVSQSNISENAIIVWDVSREVPLSNQVYAEAYTCPCLRLHPFDSIFVAQSNGNYVAIFTATPPYRLNKYKRYEGHVISGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAHDQACIDVAFHPIIPNVIASCSWDGSILVFE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 305 IPR001680 GO:0005515
Phco9g01720 478 Gene3D - 152 478 IPR015943 GO:0005515
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 444 IPR001680 GO:0005515
Phco9g01720 478 MobiDBLite consensus disorder prediction 69 110 - -
Phco9g01720 478 Pfam WD domain, G-beta repeat 400 435 IPR001680 GO:0005515
Phco9g01720 478 Pfam WD domain, G-beta repeat 273 296 IPR001680 GO:0005515
Phco9g01720 478 Pfam WD domain, G-beta repeat 172 210 IPR001680 GO:0005515
Phco9g01720 478 Pfam WD domain, G-beta repeat 221 252 IPR001680 GO:0005515
Phco9g01720 478 CDD WD40 167 478 - -
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 219 IPR001680 GO:0005515
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 301 - -
Phco9g01720 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 211 - -
Phco9g01720 478 SMART WD40_4 394 435 IPR001680 GO:0005515
Phco9g01720 478 SMART WD40_4 438 478 IPR001680 GO:0005515
Phco9g01720 478 SMART WD40_4 299 345 IPR001680 GO:0005515
Phco9g01720 478 SMART WD40_4 170 210 IPR001680 GO:0005515
Phco9g01720 478 SMART WD40_4 215 254 IPR001680 GO:0005515
Phco9g01720 478 SMART WD40_4 257 296 IPR001680 GO:0005515
Phco9g01720 478 ProSitePatterns Trp-Asp (WD) repeats signature. 197 211 IPR019775 -
Phco9g01720 478 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 76 478 - -
Phco9g01720 478 MobiDBLite consensus disorder prediction 88 104 - -
Phco9g01720 478 SUPERFAMILY WD40 repeat-like 168 477 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01720 Phco-Chr9 40634865 40649607 Dispersed