Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03249 ATGGTGTCAAAATCCTATTCAAACCTATTGGAGTTGGCCTCTGGAGAGGCTCCTTCATTTGGGTACATGAACAGGAGAATTCCAAGAATTATGACCGTGGCTGGGTTGATATCAGATGTTGATGACGACCCAGTGGATAGTGTGTGCTCTGATCCGTCGTCGTCGTCGGCGCACCGTGACCGGATAATCATGGTGGCTAATCAGCTTCCTATAAGGGCTCAGAGGAGGCCAGATGGGAATAGGAGTTGTTGGTCTTTTGAGTGGGATGAGAATGCCCTTCTTCAGCTGAAAGATGGGTTAGGGGATGATGATATAGAGGTTATTTACGTGGGATGTCTTAAGGAGGAGGTGCATCCAAGTGAACAAGATGAGGTTTCACAGACACTTCTCGAGACCTTCAAGTGTGTCCCAACTTTTCTTCCTGCTGACCAGTTTACGAAGTTCTACCATGGCTTCTGCAAGCAGCAGTTGTGGCCACTGTTTCATTACATGTTGCCCTTGTCACCAGAACTTGGTGGGAGGTTTAACAGGTCACTGTGGCAAGCTTATGTGTCAGTGAATAAAATTTTTGCAGATAGGATCATGGAAGTTATCAACCCTGAAGATGATTATGTGTGGATACATGATTATCATCTGATGGTGTTACCAACTTTCTTGAGGAAGAGGTTCAACAGGGTGAAATTGGGGTTCTTCCTTCACAGCCCATTCCCTTCATCAGAGATATATAAAACATTGCCTGTTAGGGAGGAGATCTTGAGAGCCCTTCTTAATTCGGATTTGATAGGCTTCCACACTTTTGATTATGCGCGCCATTTCCTCTCCTGTTGCAGCCGGATGCTAGGCCTTACCTACGAATCAAAGAGAGGTTATATTGGGATTGAATACTATGGTAGAACTGTTAGTATCAAAATTCTTCCTGTTGGTATTCACCTGGGTCAGCTTCAATCTGTTTTGAAGATGCCTCAGACTGAAGAAAAAGTTTGTGAGCTCATCAAACAGTTTTCTGATCAAGGAAGAACACTGTTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTTCTCATTCAGCACCCTGATTGTCAGGGAAAGGTAGTGCTAGTCCAGATAGCCAATCCTGCTAGGGGACGGGGGAAGGATGTGAAAGAAGTGCAAGCAGAGACAAAGGCCACAGTGAAACGGATCAATGAAACATTTGGGAAACCCGGGTATGATCCTGTGATTCTGATAGAGGAGCCTCTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCAGAGTGTTGTTTAGTCACTGCCGTAAGGGATGGAATGAATCTCATACCCTATGAATATATCATCAGTCGTCAAGGAAATGAAATGTTGGACAAAGTTTTGGGTCTAGATTCCTCTCCTAAGAAAAAAAGCATGTTAGTTGTGTCTGAATTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCGTGGAATATTGATGCAGTAGCCGATGCAATGGACTCTGCTCTGGAAATGGCTGATTCTGAGAAGGAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGAAGTTTCTTGCAAGATTTGGAAAGGACTTGTAGTGATCATGTGAGAAGAAGGTGGTGGGGGATTGGGTTTGGATTAAGCTTTAGAGTTGTGGCACTTGATCCAAACTTCAAGAAGCTTTCCATGGAGCACATAGTTTCAGCATACAAACGGACAACAACTAGAGCAATCCTTCTTGACTATGATGGTACACTGATGCCTCAATCATCCACAATTGATAAGAGTCCAAGCAGTAAATCAATTGAAATTCTTAGTAGTTTGTGTAGAGATAAGAACAATGTGGTTTTCCTTGTTAGTGCTAGAAGCCGAAAGATGCTTTCAGAATGGTTTTCTTCTTGTGAGAATCTGGGAGTTGCAGCTGAGCACGGTTACTTTCTAAGAATGAAACGAGATGAAGAGTGGGAAACACATGTTGCCGCAACAGACTGTAGTTGGAAACAAATTGCAGAACCCGTAATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGACAAGGAGACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCAGACTTTGGTTCATGCCAAGCTAAGGAACTTCTTGATCACCTTGAGAGTGTGCTTGCAAATGAACCAGTAACAGTCAAGAGTGGGCAGAATAATGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTGCCATGCAAGAAAAGGGAATGTGCCCTGATTTTGTTTTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGGTGATCACCAGCTCAATGGGTGGGCCGATTGCCCCACGGGCCGAGGTTTTCGCCTGCACCGTTTGTCGAAAACCCAGTAAGGCTAAGTACTATCTGGATGATACCACTGAAATAGTGAGATTGCTCCAAGGCTTAGCCTGTGTTTCAGAGCAAATAGTTTCATTTTCTTCAGAGCAAATAGTTTGTTAA 2586 0.4381 MVSKSYSNLLELASGEAPSFGYMNRRIPRIMTVAGLISDVDDDPVDSVCSDPSSSSAHRDRIIMVANQLPIRAQRRPDGNRSCWSFEWDENALLQLKDGLGDDDIEVIYVGCLKEEVHPSEQDEVSQTLLETFKCVPTFLPADQFTKFYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHLGQLQSVLKMPQTEEKVCELIKQFSDQGRTLLLGVDDMDIFKGISLKLLAMEQLLIQHPDCQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEMLDKVLGLDSSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTTTRAILLDYDGTLMPQSSTIDKSPSSKSIEILSSLCRDKNNVVFLVSARSRKMLSEWFSSCENLGVAAEHGYFLRMKRDEEWETHVAATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSAMQEKGMCPDFVLCIGDDRSDEDMFEVITSSMGGPIAPRAEVFACTVCRKPSKAKYYLDDTTEIVRLLQGLACVSEQIVSFSSEQIVC 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03249 861 NCBIfam trehalose-phosphatase 596 844 IPR003337 GO:0003824|GO:0005992
Phco8g03249 861 Gene3D Glycogen Phosphorylase B; 316 534 - -
Phco8g03249 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 714 - -
Phco8g03249 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Phco8g03249 861 NCBIfam HAD-IIB family hydrolase 599 801 IPR006379 -
Phco8g03249 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 845 IPR001830 GO:0003824|GO:0005992
Phco8g03249 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Phco8g03249 861 Pfam Trehalose-phosphatase 600 834 IPR003337 GO:0003824|GO:0005992
Phco8g03249 861 CDD HAD_TPP 598 839 - -
Phco8g03249 861 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 727 858 - -
Phco8g03249 861 Gene3D - 727 856 IPR023214 -
Phco8g03249 861 Gene3D - 596 726 IPR023214 -
Phco8g03249 861 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
Phco8g03249 861 FunFam Alpha,alpha-trehalose-phosphate synthase 317 534 - -
Phco8g03249 861 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Phco8g03249 861 Gene3D Glycogen Phosphorylase B; 53 315 - -
Phco8g03249 861 FunFam Trehalose-6-phosphate synthase 2 681 760 - -
Phco8g03249 861 SUPERFAMILY HAD-like 597 845 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03249 Phco-Chr8 47162353 47165885 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03249 8 47162353 47165885 Phco8g03249 8 47162353 47165885 ECH