Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03246 ATGAACTCCTTGTGGAAGAAGGAGTTGTGGTTGATTGTTTGCTTGCACAAACAGACATTGAAAGAGGTCAGTATCTGTGTCCCTGGCAGTGCTGGTGTTGTTGGCATTGCTGATACCTTCAGTCTTCAATATCAGGCTAATGCTTTTGAACTTGTTCTTGGCATCTGTCAGGCAAAAGAGTTGGCAATTAGGATGGGTAAAACAATTGAGTTGTATGGATTTCCTACTTCTGTGACAGCGCAAGATGTAAAGATATTTGTAGAGAATTACACTGGTAAAGGAACTATTGCAATGATGAAGGTAAGACATGGCAAAGGTCGGGTTCCAAGAGCATTTGCTATTATTCAATTCACCACAGAAGAGTGTGCTACATCTATGATGTTGATAGCTAATAACTTTTTGAAAACACTGCGGTATGGAACGGCCTTTTTAAAAGCTCGGGTACTGGAAAAAGATATTGATTCAAAGATAGGAATGGATTTTCCTAGTTTGGAAGGTGTGAAAGTGTATTTTGGCTGCCAGATCTCGAAAGAAGGATTTTCTGTTTTGGAGAAAATTCAGGATGTCAGTTTAAGTTTTGGGAGTGGAAAGAGAAAGGTGCAGTTGATATTTTCGTATGACCTTGGGCAATATAAACTTGATTTTTCATATGAGAACATTTGGAAGGTTGAGCTGGTTCGACCACGGAATAGAACTGCATGTTATCTCCTTGTTCAGTTACTTGGTGCTCCCCGGATATTTGAGAATGGCATACAAACGTCGGCAGATGTATTTGACAGTATATTTGATAATCCATTGTACAACTTCTTCAAAGATGTCCCTGAAGACCAATGGACCAGAACAATAGATTTCACTAAGGATAGTTGTATTGGGCAGTCCTCCGCCATGTGTTTGGAGTTTTCTAGTGGCCAAAATTTACCAAATTTCAAGGATATCTTTGCTTATTATGAGCAAAGTGAGAGGCAATACACACTAGAGATAGGAATACCCTTTTCCCAAAATTGTGATCTTGTCCCCATTGTTGCTCCTCAAGGAGTTGAAATACCATATGACATATTGTTTAAAGTCAATTCATTGGTTCAGCATGCATGTCTTGCAGGACCTGCACTCAATGCTGACTTCTATCGCTTGGTTGATCCGCACAGAATGCCACTTGATTTTATTGAAAATGCTTTAGAAAAATTGTACTATTCAAAGGAATTCTGTTATGAGCCGACAAAGTGGCTCACTAATCAGTACAAGAAGTACCTGAAATCAAAGCATAGTCCACGGTCGCCTGCAATATCTTTGGATACAGGGTTGGTATATGTTCGCAGGGTTCAGATCACACCTTGCAAAGTTTACTTTTGTGGCCCAGAAGTTAATGTCTCAAATCGTGTTCTCCGACATTTCCATGAACATTTGGATAACTTTATACGTGTTTCATTTGTCGATGAGGAGTTGGATAAAATGTTTTCAACTGATTTATCATCACGTGCACAGAAGAAAACTGAGGTATACAAAAGAATTCTGGACATCCTTAAAAATGGCATTGTTATTGGAGATAAGAAATTTGAATTTCTGGCATTCTCATCAAGTCAGTTGCGGGAAAACTCTCTCTGGATGTTTGCTTCTACAGGAACTGGATGCAGTGCCGCTTTCATAAGGGAATGGATGGGAAATTTTAGCCGGATTAGGAATGTTGCAAAATATGCTGCTAGGCTGGGGCAATCTTTTGGTTCATCTACTGAAACTTTAAGCGTCCGTAGGGATGAAATTGAAATTATTCACGATGTCAAGAGGACTTGTGATGGAAAGGAATATGTCTTCTCTGATGGTATTGGGAAAATATCTCTTGAATTTGCCAAGAGAGTGGCTAAAAAATGTGGCTATGATTGCACTCCATCTGCCTTTCAGATTCGTTATGGTGGTTACAAAGGAGTTGTAGCTGTTGATCCAGAATCACTTTTTAAGCTATCGCTGAGGAATAGCATGCGGAAGTACGATTCAGATAACACGAAGTTAGATGTTTTGAGTTGTAGTAAGTTTCAGCCATGTTTTCTGAACAGGCAGTTAATTACTCTCTTATCCACTCTTGGTATCGAAGATGGTGTTTTTGAGAAAAAACAAAGAGAAGCTGTGGATCAACTGAACACTATACTAACAGATTCATTGAAGGCACGGGAAGTTCTGGACATGATGTCTACTGGGGAGATCACCAATGTTCTGAAGGAGATGCTCATTTGTGGCTACAAGCCTAATGAGGAACCATTCCTTTCAATGATGCTGCAAGTATTCAGGGCATCAAAACTGTTGGAACTGCGACTCAAATCCAGGATCTTTATTCCGAAAGGAAGAGCAATGATGGGGTGTCTAGATGAAACTAGTTCCCTGGAATATGGTCAAGTATTTGTGCAGTTTTCCAAGAATAGGCTGCGGGATCTGTCTGAAGATTCTTGTTCCGATAATTTGCAAAAAACTTATATGGTTGTTGGTAAGGTGGTAGTAGCTAAAAACCCTTGCTTGCACCCTGGTGATGTGCGTGTTTTACAAGCTGTAGATGTGCCAGATTTGTACCACATGGTGGACTGCGTTGTTTTCCCTCAGAAAGGACGAAGACCTCATCCAAATGAATGTTCGGGAAGTGATCTGGATGGAGATATCTACTTTGTTTGTTGGGACCCTGAATTGATTCCTTCCCGCGTAGTCCAACCAATGGACTATACTCCGTTCTCCACTATAGAACTGGATCATGATGTCACAATTGCGGAGGTTGAGGAGTATTTTTGCAATTACATTGTGAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCTGACAACCAACCAGGAAAAGCCATGTCTGTTAAATGTATTGAGCTTGCAAAGCTGTTTTCAACAGCAGTTGACTTTCCAAAAACTGGTGTTCCAGCTGTTATTCCTCGGGAACTGTATGCCAAAGAGTATCCTGATTTCATGGAGAAGTCTGACAAAGTCACCTATAAATCGCCTAACGTAATAGGAAAGCTCTTCAGGGAAGTTAAAGAAGCAATAAGTGCCGATGACTCTATTTCATCCTTCACCATTGAGGTGGCCAGAAGGTCTTACGACACTGACATGGAAGTTGATGGCTTTATGGATTATGTTGATGATGCTATCTACTACAAAAGCAATTATGACTACAAGTTGGGAAATTTGATGGACTACTATGGGATTCAAACAGAAGGTGAAATCCTGAGTGGTAATATAACCAAAATGTCAAAATCGTTCAACAAAAGAAGGGATGCAGAAGCAGTGAATGTGGCTGTGAGGTCCCTAAGGAAAGAGGCTCGGTCCTGGTTCAATGAGGGAAGCAGTGATGATGCATATGCAAAAGCTTCTGCATGGTACCATGTTACCTATCATCCAAGTTACTGGGGTTCATACAACGATGAAGGGATGAATAGGGATCATTATCTAAGTTTCCCATGGTGTGTTTACCCTCAACTTGTCCAAATCAAGAAGGAGAAAGTCTCCATTAGAAGGTACTCTTCAGCATACAGATTGAGTGGGTTGCATTTGAATTGA 3555 0.4048 MNSLWKKELWLIVCLHKQTLKEVSICVPGSAGVVGIADTFSLQYQANAFELVLGICQAKELAIRMGKTIELYGFPTSVTAQDVKIFVENYTGKGTIAMMKVRHGKGRVPRAFAIIQFTTEECATSMMLIANNFLKTLRYGTAFLKARVLEKDIDSKIGMDFPSLEGVKVYFGCQISKEGFSVLEKIQDVSLSFGSGKRKVQLIFSYDLGQYKLDFSYENIWKVELVRPRNRTACYLLVQLLGAPRIFENGIQTSADVFDSIFDNPLYNFFKDVPEDQWTRTIDFTKDSCIGQSSAMCLEFSSGQNLPNFKDIFAYYEQSERQYTLEIGIPFSQNCDLVPIVAPQGVEIPYDILFKVNSLVQHACLAGPALNADFYRLVDPHRMPLDFIENALEKLYYSKEFCYEPTKWLTNQYKKYLKSKHSPRSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLSSRAQKKTEVYKRILDILKNGIVIGDKKFEFLAFSSSQLRENSLWMFASTGTGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIEIIHDVKRTCDGKEYVFSDGIGKISLEFAKRVAKKCGYDCTPSAFQIRYGGYKGVVAVDPESLFKLSLRNSMRKYDSDNTKLDVLSCSKFQPCFLNRQLITLLSTLGIEDGVFEKKQREAVDQLNTILTDSLKAREVLDMMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSSLEYGQVFVQFSKNRLRDLSEDSCSDNLQKTYMVVGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPELIPSRVVQPMDYTPFSTIELDHDVTIAEVEEYFCNYIVNDSLGIIANAHTVFADNQPGKAMSVKCIELAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYKSPNVIGKLFREVKEAISADDSISSFTIEVARRSYDTDMEVDGFMDYVDDAIYYKSNYDYKLGNLMDYYGIQTEGEILSGNITKMSKSFNKRRDAEAVNVAVRSLRKEARSWFNEGSSDDAYAKASAWYHVTYHPSYWGSYNDEGMNRDHYLSFPWCVYPQLVQIKKEKVSIRRYSSAYRLSGLHLN 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03246 1184 CDD RRM_SF 69 127 - -
Phco8g03246 1184 Pfam RNA dependent RNA polymerase 442 1010 IPR007855 GO:0003968
Phco8g03246 1184 SUPERFAMILY RNA-binding domain, RBD 63 133 IPR035979 GO:0003676
Phco8g03246 1184 PANTHER RNA-DEPENDENT RNA POLYMERASE 66 1166 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03246 Phco-Chr8 47135233 47143740 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03246 8 47135233 47143740 Phco8g03246 8 47135233 47143740 ECH