LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g03242	ATGTGCTTCCCCTCCAAATTTCCATTCGCACCGGTTTCCATTATTCTCCTATGCTCACTCTCGCACATTGTGCGGCGCTTCTCCGCCTCTGAACTCTCGCTAAACGAAGTTGTTGCTCTCGTCGCTCCCATGGCTCCGTCGCGTTCCGGCAGCGACGCATGCAGGGGCGGAACGCCGGAGTTCCCGGCGGGGCTCCGGGTCTTGGTCGTCGACGATGACGCCACCACACTGAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATCATGATGTCTGGTGATAGTACAACAAGTGCCGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAGCATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGACAGTGATTGGAATAAACGGGGGAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGGACCAAAAAAGAGGAGCAGTTTAAAGGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCAAGTCATTTACAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCAGTTCCTGGGACTATAGAATCCAAGCTGAGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTTGCCCTGCATCTAACATAATGTCTACAATGGACCAGGCTACCTTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGCGTCCTAACATTGGCACAGATTTTCTTCCATCTGTTTTAACTGCGAATGATGTGTCGTCAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGTTGAAAGAGTGGGTACTCAGAATAACAACATACTGATGGATATATTAGACCACCAACAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCACCAGCAACAGCAACAGCTGCGGCAGCAGCCTCTGATACCTGATCAAAGTTGTTCGATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTCTGACACTCCACAGGCAGTAAATAGTTCTGCTTCTGTCAATCAGAATTGCAGTTTTGGCAGGAATTCCATAATTGATTATAGTTTATTGTCACAGAAATCAAATAATTCAGTTAGTGCATCTCAATTTCCCAGTAGGGACACAAAAGCTCAAGGTGTTCTGTATGGGTATACTACACCCTCCACTTGTTCTATGAGCTCCATCAATGGCAATTTTCAGCACCTTCAAAACTCAACTTTGACATTTGGTGCTGCAAGACCTTTTCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTCAAATCGGGTGATTCATTCGATCAAGTATGCCTTAGGAATATTGGGTTTATTGGCAAAGGTATCTGCATTCCAAATAGGTTTGTGCAAAATGAAATTGATTCATCTGTAAGTGATTTTAGTCAAATGAAAGTCCATGTAGATAGCAGTGGCAACACACTGAAGGAGGAGCCGAATTTTATAAATATGCAAAAAGGGAGTCGCCCAATGGTAGAAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG	2073	0.4404	MCFPSKFPFAPVSIILLCSLSHIVRRFSASELSLNEVVALVAPMAPSRSGSDACRGGTPEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSSVADAAEVVKGPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLSATGRFDIQALAAAGHVPPETLAALHAELLGCPASNIMSTMDQATLLQASIGLKHSHAEHAVAYGQPLVKRPNIGTDFLPSVLTANDVSSGYGAWPSSNNTMGSVRPNNSVERVGTQNNNILMDILDHQQRQQPQQKQQQHHQQQQQLRQQPLIPDQSCSINVQPSCLVVPSQSSDTPQAVNSSASVNQNCSFGRNSIIDYSLLSQKSNNSVSASQFPSRDTKAQGVLYGYTTPSTCSMSSINGNFQHLQNSTLTFGAARPFPSPLPMSDRQDPYGFKSGDSFDQVCLRNIGFIGKGICIPNRFVQNEIDSSVSDFSQMKVHVDSSGNTLKEEPNFINMQKGSRPMVERYQSCDHSSVFTE	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g03242	690	FunFam	Two-component response regulator	65	202	-	-
	Phco8g03242	690	FunFam	Two-component response regulator	245	308	-	-
	Phco8g03242	690	Gene3D	-	245	308	-	-
	Phco8g03242	690	MobiDBLite	consensus disorder prediction	458	481	-	-
	Phco8g03242	690	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	249	302	IPR006447	GO:0003677
	Phco8g03242	690	Pfam	Myb-like DNA-binding domain	251	299	IPR001005	-
	Phco8g03242	690	SUPERFAMILY	CheY-like	64	188	IPR011006	-
	Phco8g03242	690	SMART	REC_2	65	177	IPR001789	GO:0000160
	Phco8g03242	690	CDD	REC_typeB_ARR-like	67	181	-	-
	Phco8g03242	690	Gene3D	-	65	199	-	-
	Phco8g03242	690	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	246	305	IPR017930	-
	Phco8g03242	690	ProSiteProfiles	Response regulatory domain profile.	66	181	IPR001789	GO:0000160
	Phco8g03242	690	Pfam	Response regulator receiver domain	67	176	IPR001789	GO:0000160
	Phco8g03242	690	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	65	461	IPR045279	GO:0009736
	Phco8g03242	690	MobiDBLite	consensus disorder prediction	222	245	-	-
	Phco8g03242	690	SUPERFAMILY	Homeodomain-like	246	306	IPR009057	-
	Phco8g03242	690	MobiDBLite	consensus disorder prediction	422	441	-	-
	Phco8g03242	690	MobiDBLite	consensus disorder prediction	190	208	-	-
	Phco8g03242	690	MobiDBLite	consensus disorder prediction	190	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g03242	Phco-Chr8	47084497	47089519	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Phco8g03242		Response_reg	1.9e-21	CL0304

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g03242	8	47084497	47089519	Phco8g03242	8	47084497	47089519	ECH