Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03231 ATGGCGATTGAAACGCTAGTGTTAGGTGCTGGTCAAGAAGTTGGGAAGAGCTGCGTGTTGGTAACCATCAACGGCAAGCGAATCATGTTCGATTGTGGAATGCATATGGGGTTCTTGGACCATCGTCGTTACCCTGATTTCACCCTTGTTGACCCCAATAAAGATTTCAACTCTGCCATCACTTGCATCATCATCACTCACTTTCATTTGGATCATGTTGGCGCTTTAGCTTACTTCACTGAAGTTTGTGGGTATAGTGGACCAATTTACATGACGTACCCAACAAAAGCTTTGGCTCCTTTGATGTTGGAAGACTATCGGAAAGTGATGGTTGATCGACGGGGCGAGGAGGAGCTATTCTCTTCCAATCAAATTACTGAGTGCATGAAGAAGGTTACTGCTGTTGATTTGAGGCAGACTGTACAAGTAGATGAAGACTTGCAGATACGTGCTTATTATGCAGGACATGTTATTGGAGCTGCAATGTTCTATGCAAAAGTAGGGGATGCAGAAATGGTTTATACTGGAGACTACAATATGACACCAGATAGACACCTTGGAGCAGCTCAAATTGATCGACTACGGCTTGACCTTCTAATAACCGAATCCACATATGCTACTACAATTCGTGATTCAAGATATGCTCGAGAGAGGGAATTCCTCAAAGCTGTTCATAAATGTGTATCATGTGGAGGCAAGGTGCTTATTCCAACATTTGCTCTTGGAAGAGCTCAGGAACTATGCATTTTGTTGGAGGACTACTGGGAACGCATGAATTTGAAGGTTCCTATCTACTTCTCAGCAGGTTTAACAATCCAGGCCAATGCGTATTATAAAATGCTTATTAGTTGGACAAGCCAGAAGATTAAAGATACATACTCTAAACATAATGCTTTCGATTTTAAAAATGTTCAAAAATTTGAAAGGTCTATGATAGATGCTCCTGGTCCTTGTGTTCTTTTTGCCACTCCCGGGATGATAAGCGGTGGATTTTCACTTGAAGTTTTTAAGCACTGGGCAGTGTCAGAAAATAACCTTGTCACTTTGCCTGGGTATTGTGTGGCTGGAACGATAGGTCATAAATTAATGTCAGATAAGCGGGGAAAAGTTGATCTGGATGCTAATACAAGAATAGATGTGCGATGCCAGGTTCATCAATTAGCTTTTAGTCCTCATACTGATTCTAAAGGGATAATGGATCTTGTAAATTTTCTCGCCCCCAAGCATGTTATACTGGTGCATGGGGAGAAGCATAAGATGGCTTCCCTTAAAGAAAAAATTCATTCTGAATTTGGCATTCAATGTTATGATCCTGCAAACAATGAAACCATATGCATTCCTTCAACTCACTATGTAAATGCAGAAACCTCAGACACTTTCATTCGAAGCTGCTTGAGTCCGAACTTCACATTTCAGAAATGCAGTTCGGTGGACATATATAACTCTACTACGTTAGACAAAAATTTAATGCCTATGCTCCAAGTTGAAGATGAAAGGGTATCAGAAGGAGTTTTGGTCGTGGAGAAGGGAAAAAAGGCAAAGATTGTACACCAGGATGAACTTTTGCTTATGTTGGAGGAACAGAAGCACCATTGA 1596 0.4104 MAIETLVLGAGQEVGKSCVLVTINGKRIMFDCGMHMGFLDHRRYPDFTLVDPNKDFNSAITCIIITHFHLDHVGALAYFTEVCGYSGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSNQITECMKKVTAVDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAGLTIQANAYYKMLISWTSQKIKDTYSKHNAFDFKNVQKFERSMIDAPGPCVLFATPGMISGGFSLEVFKHWAVSENNLVTLPGYCVAGTIGHKLMSDKRGKVDLDANTRIDVRCQVHQLAFSPHTDSKGIMDLVNFLAPKHVILVHGEKHKMASLKEKIHSEFGIQCYDPANNETICIPSTHYVNAETSDTFIRSCLSPNFTFQKCSSVDIYNSTTLDKNLMPMLQVEDERVSEGVLVVEKGKKAKIVHQDELLLMLEEQKHH 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03231 531 SMART Lactamase_B_5a 15 232 IPR001279 -
Phco8g03231 531 FunFam Integrator complex subunit 11 isoform X3 8 235 - -
Phco8g03231 531 Pfam Beta-Casp domain 244 362 IPR022712 -
Phco8g03231 531 FunFam Cleavage and polyadenylation specificity factor subunit 3-II 212 392 - -
Phco8g03231 531 SMART Beta_Casp_2 244 362 IPR022712 -
Phco8g03231 531 Gene3D - 212 390 - -
Phco8g03231 531 Pfam Metallo-beta-lactamase superfamily domain 20 191 IPR001279 -
Phco8g03231 531 SUPERFAMILY Metallo-hydrolase/oxidoreductase 6 447 IPR036866 -
Phco8g03231 531 CDD INTS11-like_MBL-fold 6 203 IPR041897 -
Phco8g03231 531 Gene3D - 8 427 IPR036866 -
Phco8g03231 531 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 5 531 - -
Phco8g03231 531 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 378 436 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03231 Phco-Chr8 46992506 47003959 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03231 8 46992506 47003959 Phco8g03231 8 46992506 47003959 ECH