Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00384 ATGGGTGTCAACTGCAGACACGTTCTTCATAGATTACAGAGTTTGAGTTTTGCCACTTATTGGAAAAAAAGCACCATGCCAACCGGCAGACGGATTTTCCACAGGGATGTGGAAAAGGAGGAATTCCAGTATGCCAGCACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTGCTCACTTTTCTCACATGGCATTTCACAAAGATTTATACAACAAAATCACTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACCACTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAGCCACACCACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGAGCTGTGACGTGGGCACTGTTTGCCAGTAAAAAAGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGAAAACAACACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGGCCACAATGCGATCAATTCACTTTCATCGAACGAAGCTTGGAATGATAAAGACATTCACGGAAACAAGTCTGCAATTTGGTATCGGGAACCTCTTGATCCGATCAGTGGAGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCGATCAATATAGCAGGCCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTTAGCAAGTTTACAGATTCACCATTGCTTTCTGCGGCATTGCCAGTTTGGGACTCCTCAAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGTTGCACAGTGGTCATATGTATTTGACCTCCCAAGAGGGTTACCTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATTCTACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGTTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTAGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTGAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTTATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTGTCAAAGGAAATGAAATTAAGAGCAGAACTGATCAGCCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGTAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTAAGGACACCAATGGCAGCAGTTATCGGGTTACTCGACATTCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTTCGTCTACTTAATAACATCCTGGACCTAAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGCTAGTTCGAGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCCATTAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACTCAAATGCTTGCAGTGATGATACAAATTTTCCACTAGAGCAAAAGAAATCACGGTGTTCACAGAAGAACAGAGCAAAACAACATGAAAACCATGCAAAGAGGACTTCCAACAGAGATAACAAAATAGTACTTTGGTTTGAAGTTGATGATACAGGCTGTGGTATTGATCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACGGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGCGATTATACTTGCGTCTGAGTGCACCTCTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTCAGTGGTACTTCTTGCACTCCATGGCAGTATGGGTCGATCTGTTACATCTAAGTGGTTACAGAAAAATGGGGTAATATCTATGGAGGCATCAGAATGGAATGGATTAACACAAATTCTTAGGGTACTCTTTCATGCTAGAAGTTCAGCTCATAATAATGGTTTTGATGCAAATTATTCAGTGCATGAAAATTTAAAGTCGAAACTACTGAGCATACAGGAATTGAGGAACCCAGTTTTTGTCATTGCTGTTGACATTGGTCTACTTGACTTGAGCACAGATATATGGAAGGAACAGGTTAATTTCCTTCACAAATACTTTGGGAGAGCAAAATTCGTGTGGATACTAAATCATGACTCCTCCAATACCATAAAGATGGAGCTTTGCAGGAAAGGACATACACTGACAGTGAACAAACCCCTCTACAAAACAAAAATGCTTCATATTTTGGAAACCATTACAAAGGAAAGAAGTGATGAGCTACAAAAGAAAATTATGACTACTCCAAGAGCTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAACGGGAGGTTCTAATCCTGTTTGTGAAAGTGGAGATAAACAAAGAGAGAAGGTAGTGAGATCTGAATCATCATCACAACACCAGATAACTAACTTGGTTGGATTAGCAAATGGATATATGGAAGACAATAATCCTTGGAAGGAAGAGTTATGTCAGAGCAGCCTCAACTCTAACGATGTCACTGCGAATGACACACCAAAATCGTCCTCCACCAAACAAGCATTGTGTGAAAAAGGTACTCAAGATGAAGATTCTGAATATGGTGAAACACGAAGGGCCAGCAGCTCAAGCAGAACAGTGAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATACTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCATTGTTGTAGCCGTAGGGGATGGACAACAAGCAGTGGATGCTCTGAATAGCACGCCTGGTCTTGAAGATTGTAGAAGGGAGTCTATCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTTCCCTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGTGGGAACTGGCTTGCACATTCCAATTGTTGCTCTTACAGCCCATGCCATGTCATGTGACGAAGCCAAGTGCCTAGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGGAAATTCTGA 3690 0.4157 MGVNCRHVLHRLQSLSFATYWKKSTMPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHTTNLATQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDLANYSMAASGHNAINSLSSNEAWNDKDIHGNKSAIWYREPLDPISGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENSNACSDDTNFPLEQKKSRCSQKNRAKQHENHAKRTSNRDNKIVLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPLDATEQHCQVDFANKGSVVLLALHGSMGRSVTSKWLQKNGVISMEASEWNGLTQILRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQVNFLHKYFGRAKFVWILNHDSSNTIKMELCRKGHTLTVNKPLYKTKMLHILETITKERSDELQKKIMTTPRATVKEGYLHESLEIDYTQCDVASSDGSDISETGGSNPVCESGDKQREKVVRSESSSQHQITNLVGLANGYMEDNNPWKEELCQSSLNSNDVTANDTPKSSSTKQALCEKGTQDEDSEYGETRRASSSSRTVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNSTPGLEDCRRESILKERNTRSSQTEILSFPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRKF 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00384 1229 MobiDBLite consensus disorder prediction 1026 1045 - -
Phco8g00384 1229 Gene3D - 474 553 - -
Phco8g00384 1229 Pfam Response regulator receiver domain 1143 1218 IPR001789 GO:0000160
Phco8g00384 1229 Gene3D - 1056 1224 - -
Phco8g00384 1229 MobiDBLite consensus disorder prediction 1026 1070 - -
Phco8g00384 1229 Pfam His Kinase A (phospho-acceptor) domain 487 552 IPR003661 GO:0000155|GO:0007165
Phco8g00384 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 541 748 IPR036890 -
Phco8g00384 1229 PANTHER TWO-COMPONENT HISTIDINE KINASE 42 755 - -
Phco8g00384 1229 SMART REC_2 1078 1221 IPR001789 GO:0000160
Phco8g00384 1229 ProSiteProfiles Histidine kinase domain profile. 493 751 IPR005467 -
Phco8g00384 1229 Gene3D - 554 752 IPR036890 -
Phco8g00384 1229 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 749 IPR003594 -
Phco8g00384 1229 SMART HisKA_10 486 552 IPR003661 GO:0000155|GO:0007165
Phco8g00384 1229 CDD REC_hyHK_CKI1_RcsC-like 1080 1221 - -
Phco8g00384 1229 CDD HisKA 487 548 IPR003661 GO:0000155|GO:0007165
Phco8g00384 1229 ProSiteProfiles Response regulatory domain profile. 1079 1225 IPR001789 GO:0000160
Phco8g00384 1229 SMART HKATPase_4 599 751 IPR003594 -
Phco8g00384 1229 SUPERFAMILY CheY-like 1076 1227 IPR011006 -
Phco8g00384 1229 FunFam Histidine kinase 1-like protein 474 553 - -
Phco8g00384 1229 PRINTS Bacterial sensor protein C-terminal signature 694 704 IPR004358 GO:0016310|GO:0016772
Phco8g00384 1229 PRINTS Bacterial sensor protein C-terminal signature 676 690 IPR004358 GO:0016310|GO:0016772
Phco8g00384 1229 PRINTS Bacterial sensor protein C-terminal signature 711 729 IPR004358 GO:0016310|GO:0016772
Phco8g00384 1229 PRINTS Bacterial sensor protein C-terminal signature 735 748 IPR004358 GO:0016310|GO:0016772
Phco8g00384 1229 MobiDBLite consensus disorder prediction 963 996 - -
Phco8g00384 1229 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 473 553 IPR036097 GO:0000155|GO:0007165
Phco8g00384 1229 MobiDBLite consensus disorder prediction 1046 1060 - -
Phco8g00384 1229 MobiDBLite consensus disorder prediction 963 977 - -
Phco8g00384 1229 MobiDBLite consensus disorder prediction 647 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00384 Phco-Chr8 3488314 3494939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco8g00384 HATPase_c 4.2e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00384 8 3488314 3494939 Phco8g00384 8 3488314 3494939 ECH
Phco4g00846 4 6523357 6530271 Phco8g00384 8 3488314 3494939 PCT