Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03658 ATGGTGAAATCGAACGAAAATGGTTCTGGTTCCGCTTCGGTCCCTCCGTTCTTGAAAAAATGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGACGCCGGTGACAGTTTCGTCATCTCCAACACCACTCAATTCTCCGTCACGCTACTCCCTACCTATTTCAAACACAACAACTTCTCCAGTTTCATTAGACAACTCAATATTTATGGTTTCAGGAAAATTGATACAGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGAATCAAAAGCAATTGTTGAAGAATATACGCAGAAGGAAACATCCACACATTGCAGATCAACAAAAAGCATTGCCTCTGAATGACAATTGTGATGAACCACCGCAAGAGGCACCAGATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTTACCCAAGAGTTGGTCAAACTCAGGCAACACCAGGAATCTTCTGAGAACAATTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTGGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCCAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATATATTAGATCAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAGCCTCCTGTAAATGAAAAACTCAAGCCTGTAGTTCCTCTATCTCCTGCTTTCGAAAAAGAACCTGAGCTCGCTGCAGATGGGCTAAAAGACTTGTGCATTAGTTCTGACTTCATGAAAGTGCTTATGGATGAAAAACTGTCTCCATTAGAAAGTCATTCTCCATTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTTCTGGGCAGTTCTTTCCTGGGAAACATTGAAGATTCTTGTAAAGAAAGTGAGGGGTGCACGGATAGTGGAATGGAAATTGAACCGACAATATCAGATACTCCTGATGAAAATTCTCGTACTTTTGAATCGATGATTGTAGAGATGGAGAGAACTCGAGAATGA 1089 0.4141 MVKSNENGSGSASVPPFLKKCYDMVEDRNTDSVIRWSDAGDSFVISNTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRNQKQLLKNIRRRKHPHIADQQKALPLNDNCDEPPQEAPDHGLWKEVENLKSDKNSLTQELVKLRQHQESSENNLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNILDQDKQDDKPIASDGMIIKYKPPVNEKLKPVVPLSPAFEKEPELAADGLKDLCISSDFMKVLMDEKLSPLESHSPFLLPDLPDDGSWEQLFLGSSFLGNIEDSCKESEGCTDSGMEIEPTISDTPDENSRTFESMIVEMERTRE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03658 362 Gene3D - 10 107 IPR036388 -
Phco4g03658 362 MobiDBLite consensus disorder prediction 327 346 - -
Phco4g03658 362 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 Coils Coil 140 167 - -
Phco4g03658 362 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Phco4g03658 362 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g03658 362 FunFam Heat stress transcription factor B-4 9 107 - -
Phco4g03658 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 221 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03658 Phco-Chr4 56280154 56282633 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g03658 HSF_DNA-bind 1.3e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03658 4 56280154 56282633 Phco4g03658 4 56280154 56282633 ECH