Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03649 ATGGCTATGGCAAAAGAGAAAGCGGAAGATGAAGAGAAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCATGAGGAATGATGAAGAAGATGATGATGGTGTTGAAGCTGTTGAGGAAGAAGATAGTGAGCTTCTTCTGAAGCCAGGGATTTTCTTCTACCCGACAACCCCAACGTCCTTTGTTGTCTCTGATGCTCTTGAACCCGATTTTCCCGTCATATATGTAAACAAGATTTTTGAAGTATCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTAGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACGCCTTTGGTGAACAGATTAAGACTTGCACCAATTCATGACGATGATGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGAGTCTCATATCCAGTATTCAAAGAGACTTGCAATCAAGAGTTTGGTAAGAATGGTGAATATTCTCCAAAGAGTGGACAATGTTTGTACAGTCAGCAGCAAGAGATGTGCGGCATTCTGCAGCTTTCCGATGAAGTATTGGCTCACAACATTTTGTCACGCTTGACACCAAGAGATGTTGCATCCATTGGGTCTGTATGTAGGAGGATACGTCAATTAACAAAGAATGAGCATGTGAGGAAGATGGTATGTCAAAATGCGTGGGGCAAAGAAGTGACCGGCACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTCACCACCCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTCGTTTTGTTTGGAGGTGAAGGAGTGGACATGCAGCCTATGGATGACACTTTTGTTCTAAATCTTGACGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCTGGAAGGTGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGCTGTGGTAGGCAAGGACTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAAGGAAGTATGTGGTGGAACCCCACCACTTCCTAGATCATGGCATAGTTCTTGCACAATTGAAGGGTCGAAATTGGTGGTCTCAGGCGGGTGCACAGATGCGGGTGTACTTCTTAGTGACACGTATTTGCTGGATCTGACAATAGATAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCACCATCTCGGTTGGGGCACTCACTCTCAGTCTATGGGAGGACGAAGCTTCTGATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTACACAATTGGCTTAGAAGATGAAGAACCACAGTGGAGGCAACTAGAATATAGTGCATTCACGGGATTAGCAAGTCAAAGTGGTGTTGTTCCTCCTCCTAGGCTGGACCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCGGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCTGAAGAGAAACCATCTTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTACTGGTGTTGGGTGGACACACTGGAGAGGAATGGATACTGAATGAGTTGCATGAGTTATGCCTGGCAAGTCGTCAGGACTCTGACCTGTGA 1890 0.4698 MAMAKEKAEDEEKVQTCGKRLKCMRNDEEDDDGVEAVEEEDSELLLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKIFEVSTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQEFGKNGEYSPKSGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIGLEDEEPQWRQLEYSAFTGLASQSGVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03649 629 Pfam Kelch motif 534 581 IPR011498 GO:0005515
Phco4g03649 629 CDD PAS 56 166 IPR000014 -
Phco4g03649 629 Pfam Galactose oxidase, central domain 310 360 - -
Phco4g03649 629 NCBIfam PAS domain S-box protein 72 166 IPR000014 -
Phco4g03649 629 Gene3D - 209 260 - -
Phco4g03649 629 SMART pac_2 131 172 IPR001610 -
Phco4g03649 629 Pfam Galactose oxidase, central domain 424 475 - -
Phco4g03649 629 Pfam Galactose oxidase, central domain 375 422 - -
Phco4g03649 629 Pfam PAS domain 66 166 IPR000014 -
Phco4g03649 629 SUPERFAMILY F-box domain 211 284 IPR036047 GO:0005515
Phco4g03649 629 FunFam Putative LOV domain-containing protein 287 492 - -
Phco4g03649 629 Gene3D PAS domain 53 178 - -
Phco4g03649 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 40 623 - -
Phco4g03649 629 FunFam Putative LOV domain-containing protein 493 625 - -
Phco4g03649 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 167 IPR035965 -
Phco4g03649 629 SUPERFAMILY Galactose oxidase, central domain 297 614 IPR011043 -
Phco4g03649 629 Gene3D - 287 490 IPR015915 GO:0005515
Phco4g03649 629 CDD F-box_AtADO-like 215 261 - -
Phco4g03649 629 FunFam Adagio protein 1 49 178 - -
Phco4g03649 629 Gene3D - 491 623 IPR015915 GO:0005515
Phco4g03649 629 Pfam F-box domain 216 253 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03649 Phco-Chr4 56221436 56224757 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03649 4 56221436 56224757 Phco4g03649 4 56221436 56224757 ECH