Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03636 ATGTCACCACATGTAAAAGGGAATGTTGTTGAGAGTTTAAGGTTGTTGTGGTGTTGCGGCAGGGAAGACGAAGAGGATTGGGTTACGGCCACTTGGAAGACGGTGATGTGTTCGCTGACCCACTTGCGTCCGCTAACATGCGCCGCATCTGCAGCGGCGTCACGATTAGTGCCCTACCCACCGGACCTCGTAAAGTGGGTAACCAGAGAGGGTGGGTTCGTGCACCGCGCGCTGGAGATAGCACAACTCGGTTCATCCAACGGACTGGGCATAGTGGCCAAGGAACAAATTCCACGTGGCACTGACCTAATTGTCCTTCCACACCACCTTCCCCTGCGCTTTACCACTCTTGAACACGACCCTCTGCTGCATCACTTGGCGCGTCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTCTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTAGTAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGCGTTCACTTACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGCAAGAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGATACAGCAATCAAAGAAGATGACCCTCTGTTACTTTGCTATGGCTGTTTAAACAATGATTTTTTCCTTCTCGATTATGGATTTGTGATGCCCTCAAACCCTTATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCCGCAAGCACAGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGAAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCTGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCAAGTAATATGGAAACTGTGCAGAAGTATGACCTCAGTACACTCCAGTCTTTAGATGTTGAAGCTCCTCTTGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATTGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCAACCGCTGAAGGCTAA 1503 0.4637 MSPHVKGNVVESLRLLWCCGREDEEDWVTATWKTVMCSLTHLRPLTCAASAAASRLVPYPPDLVKWVTREGGFVHRALEIAQLGSSNGLGIVAKEQIPRGTDLIVLPHHLPLRFTTLEHDPLLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVSVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRVHLPMMLPLIDMCNHSFNPNARIVQQEDTSSMKMQVKVVADTAIKEDDPLLLCYGCLNNDFFLLDYGFVMPSNPYDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQKLILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVVLSSNMETVQKYDLSTLQSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATAEG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03636 500 ProSiteProfiles SET domain profile. 76 305 IPR001214 GO:0005515
Phco4g03636 500 FunFam Histone-lysine N-methyltransferase setd3 31 318 - -
Phco4g03636 500 Gene3D set domain protein methyltransferase, domain 1 30 318 - -
Phco4g03636 500 Gene3D - 356 495 IPR036464 -
Phco4g03636 500 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 62 462 - -
Phco4g03636 500 SMART set_7 76 311 IPR001214 GO:0005515
Phco4g03636 500 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 315 494 IPR036464 -
Phco4g03636 500 Pfam SET domain 88 305 IPR001214 GO:0005515
Phco4g03636 500 SUPERFAMILY SET domain 61 323 IPR046341 -
Phco4g03636 500 FunFam SET domain containing protein 341 494 - -
Phco4g03636 500 CDD SET_LSMT 77 319 - -
Phco4g03636 500 Pfam Rubisco LSMT substrate-binding 354 475 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco4g03636 SET 3.8e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03636 4 56133533 56136732 Phco4g03636 4 56133533 56136732 ECH