Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02061 ATGACACTTCTCTCCAACAACATGGACAATGGTTGCTTCTCTTCGCCACGCCATGATGCTTTTCCGGCTGGTCTGCGAGTTCTCGTTGTCGATGATGATCCAACATGGCTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACTACATGTTGTTTAGCAATAGAGGCTCTGAAAAAACTTCGTGAAAGGAAAGATGCATTTGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACCAGCAGGGTGATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAACACGTCTTTAGAAAAAGGATGCATGAAGCAAGAGATTTTGAAAGCCATGAGGGTTTTGAAGCCCTTCATTTGATGATGAATGGATCAGATCAGTCCGATGATGGTAACCTGTTTGCTGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAACAAGCACGACGATAAAGAATTTGGAGATCATTCTCCCTCAAAGAAAGCTAGGGTTGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGACTGTTCCCTGGTTGACAAGAGAAAACGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAGCGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTTTGCTAAACACTGCAAACAACAAGCAACAAAATGATGTTGCCATTGACAGCTTCAGTCATTCAGATGGAAGTTTACTATTTCAGATGGATGCTCCAAGTCATGAAGGTGATCTCAAGGGAATCGTGTCAGAGCCTACAACCGAAAAAAGTAGAACTCCACCAATAAGTTCACAAATGAGCCTCAATCAACCCTTTTCATCTTTAGAGTCATCAGAAGCAAGCCATGCAGTATTTGATTGCACCATACCAACACAGTACTCTTGGGGTGAGTTTCCGAAAGGACCACTCAAAGAAGAACAGAAGACAATTGTTCAATTAGAGGATAGCTTCAGCCACTTGCCACTACATGGTACACGGCAGCACATTCAGGTTGATCAATCACAATCGAATGCTTCGATTAATTCTAATCCTTCTATAACAAAAGAAGAGGTTGCCCCCAGCTTAGACATCAAACCTTTATATGCTGGTTACAAGAATGATTATGTGAGTCCAATGAGTTCAATAGGATCTGCAGTTGACACCTTTCCTAATCAGTCCAAAAGCCTCATTGTGAATGATCAATCTTCAGAGCCCATTTTCACCTCAACTTTGGGCTTGAAAACTCACGGATTTGATCTAGATTGCATTTCTGATCTGGATTTTTACCAAAGGAATCTCTTATTGGGTGGTGAGGCAGCTTCTGCACCTTTGGAGGACGACCTGAATTTCTTTTTGCTGCAAACTGATTGGTACAACATGAATTTTGGGCAGCAGAATATAAATATGTCAGAATGTTATGATCCAAGGCTTGTTGGTGAAGCCCCTAGCTACTTTTATGATTCTTCAGATTATTCATCGGTAGATCAAAGTCTATTCATAGCATGA 1740 0.4052 MTLLSNNMDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLAIEALKKLRERKDAFDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLMMNGSDQSDDGNLFAVEEITSIKKRKDADNKHDDKEFGDHSPSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMTVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSLLNTANNKQQNDVAIDSFSHSDGSLLFQMDAPSHEGDLKGIVSEPTTEKSRTPPISSQMSLNQPFSSLESSEASHAVFDCTIPTQYSWGEFPKGPLKEEQKTIVQLEDSFSHLPLHGTRQHIQVDQSQSNASINSNPSITKEEVAPSLDIKPLYAGYKNDYVSPMSSIGSAVDTFPNQSKSLIVNDQSSEPIFTSTLGLKTHGFDLDCISDLDFYQRNLLLGGEAASAPLEDDLNFFLLQTDWYNMNFGQQNINMSECYDPRLVGEAPSYFYDSSDYSSVDQSLFIA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02061 579 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Phco4g02061 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 314 IPR045279 GO:0009736
Phco4g02061 579 FunFam Two-component response regulator 203 266 - -
Phco4g02061 579 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Phco4g02061 579 Gene3D - 204 266 - -
Phco4g02061 579 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Phco4g02061 579 MobiDBLite consensus disorder prediction 269 295 - -
Phco4g02061 579 CDD REC_typeB_ARR-like 27 141 - -
Phco4g02061 579 MobiDBLite consensus disorder prediction 337 356 - -
Phco4g02061 579 SMART REC_2 25 137 IPR001789 GO:0000160
Phco4g02061 579 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
Phco4g02061 579 SUPERFAMILY CheY-like 24 152 IPR011006 -
Phco4g02061 579 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Phco4g02061 579 Gene3D - 25 196 - -
Phco4g02061 579 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02061 Phco-Chr4 40824924 40829039 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco4g02061 Response_reg 8.2e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02061 4 40824924 40829039 Phco4g02061 4 40824924 40829039 ECH
Phco2g02942 2 58355150 58358870 Phco4g02061 4 40824924 40829039 PCT