Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00846 ATGTTACTTTATACGTTCATGGCATCTGCAGGAACAGGGAGTTTAGTTATGGCAGAAAACAAAGACGAAACCTGTTCTGAAACTTCTGAATGTTCATCAGCCTTAACCATGCCAATGGCTACCAAGTGCAGATACTTGTTTCATAGATTATGCGGTTCTACCGATTCATGGAACAAAAGCACCCCCCCAAAAGGTCGAAGAATTTTCCACAGGGATGTGGAAAAAGAAGAATTCCAGTATGCTACTAGTCACTGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTTGCCATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAGCAAAATCGCTTAACAGTTTGGCATATGGATTGCGTTATGAACTTCTGCAACGCCCAGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAGCTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCAGTAACATGGGCTTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAATGGATTTGTGCACGCATTCCACAGAGATCTGAAGGACAACAACACATTCTACATTTATTCTGATCTTTCAAATTACTCCATGGGGGCCAGCAACTCTAATGAGGTCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGTCCTTCGTGGAAACTATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCGCCTGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTGCCGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGTTGCACAGTGGTCATATGTACTTGACTTCCCAAGAGGGTTATTTACTGGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACCAAGCCTAAGCTTAAGATGGCCGTTGACTGTGAAGATGACATAATTCGACAGGGAGCTGAGTGGTTGCAGAGAACTTATGGGAACAATTTCCCTCCAAGTCACGAGGTTCATGTAGAAAATGTCAAGCTAGGCCAAAAGACATATTACATTGACTCGTTCTTCCTAAATTTGAAGAGACTTCCTTTGGTAGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTAGATGAAAGAGCCTTCAAAACGCTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTTGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCCTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGCAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTCCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTGTTCTGCGAGGATGGAGTGAAATCCCAAATTCTTCCGTTGGCAGTCCAAATTTTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAGCATCTATAAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACGGGCTGTGGTATTGACCCAAGCAAGTGGGATTCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACGGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGCACATCAAGGTAGTAAAAAAGGAGGGCGCAGGAACACTAATGCGATTATGCTTGCTTCTCAGTGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGCTTTGACAGACAGTGGCTTAGTGGTACTGCTTGGCTTACATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCTAGAAGTTCAGTGCATAATACTGACTTTGATGCACACTATTCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATACGAGACATGAGGAACCCAATATTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTCCTATGGATGCTAAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATATACTGATGGTCAACAAACCCCTTTACAAAGCAAAAATGGTCCATATTTTGGAATCCGTCATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTTCCAAGGACAGCAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGACATAGTTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAGCTGAGAAGCTAGACAAATCTCATCCATCATCACCATACCATGTGAATAACTGCCTAGATAGATTAACCAATGAAAATGAATGTTTGGAGGAAAATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAATTATGCCACTGAAGACAACCAACATAAATCACTGTCCACCAAAGAATCACCATCCATTTCAACAGGAGATCAGGATGAAGATTCTGAATGTGGGGAAACACATAGGGTCACCAGCTCAAGTAAAGCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCGGTACTTCAAAGGGTTGCAACCATAATGCTTGAGAAAATGGGAGCAGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAGTTGCATGTTCACTGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTGACTAGCCGTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACCAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAGGCCAAATGCCTGGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATAGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 3795 0.4142 MLLYTFMASAGTGSLVMAENKDETCSETSECSSALTMPMATKCRYLFHRLCGSTDSWNKSTPPKGRRIFHRDVEKEEFQYATSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVHAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSVSTHQAWDDKVLRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPKLKMAVDCEDDIIRQGAEWLQRTYGNNFPPSHEVHVENVKLGQKTYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLARELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSEIPNSSVGSPNFPLDQKKLWSLQKCREKPNANHSKKASIKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGHIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVALTDSGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNTDFDAHYSAKEELKSKLLNIRDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNIKMELRRKGHILMVNKPLYKAKMVHILESVIKERNFELQKKNMIVPRTAMKEGDLHEFLEIDSTHFDAASSDDSDISDIVGSNPVSANGDKPAEKLDKSHPSSPYHVNNCLDRLTNENECLEENNLRKEESSSPSSNYATEDNQHKSLSTKESPSISTGDQDEDSECGETHRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALSCMFTAEDCRRESLQKERNTRSQTEILTSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTS 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00846 1264 Gene3D - 1093 1262 - -
Phco4g00846 1264 SMART REC_2 1114 1256 IPR001789 GO:0000160
Phco4g00846 1264 PRINTS Bacterial sensor protein C-terminal signature 710 724 IPR004358 GO:0016310|GO:0016772
Phco4g00846 1264 PRINTS Bacterial sensor protein C-terminal signature 745 763 IPR004358 GO:0016310|GO:0016772
Phco4g00846 1264 PRINTS Bacterial sensor protein C-terminal signature 728 738 IPR004358 GO:0016310|GO:0016772
Phco4g00846 1264 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 575 781 IPR036890 -
Phco4g00846 1264 Gene3D - 588 786 IPR036890 -
Phco4g00846 1264 Pfam Response regulator receiver domain 1116 1255 IPR001789 GO:0000160
Phco4g00846 1264 SMART HKATPase_4 633 785 IPR003594 -
Phco4g00846 1264 Coils Coil 1036 1056 - -
Phco4g00846 1264 ProSiteProfiles Response regulatory domain profile. 1115 1260 IPR001789 GO:0000160
Phco4g00846 1264 FunFam Histidine kinase 1-like protein 508 587 - -
Phco4g00846 1264 Pfam His Kinase A (phospho-acceptor) domain 521 586 IPR003661 GO:0000155|GO:0007165
Phco4g00846 1264 ProSiteProfiles Histidine kinase domain profile. 527 785 IPR005467 -
Phco4g00846 1264 SUPERFAMILY CheY-like 1112 1260 IPR011006 -
Phco4g00846 1264 SMART HisKA_10 520 586 IPR003661 GO:0000155|GO:0007165
Phco4g00846 1264 Coils Coil 1256 1264 - -
Phco4g00846 1264 CDD HisKA 521 582 IPR003661 GO:0000155|GO:0007165
Phco4g00846 1264 MobiDBLite consensus disorder prediction 995 1034 - -
Phco4g00846 1264 MobiDBLite consensus disorder prediction 1055 1081 - -
Phco4g00846 1264 MobiDBLite consensus disorder prediction 1049 1105 - -
Phco4g00846 1264 CDD REC_hyHK_CKI1_RcsC-like 1116 1256 - -
Phco4g00846 1264 Gene3D - 508 587 - -
Phco4g00846 1264 PANTHER TWO-COMPONENT HISTIDINE KINASE 78 790 - -
Phco4g00846 1264 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 783 IPR003594 -
Phco4g00846 1264 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 508 587 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00846 Phco-Chr4 6523357 6530271 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g00846 HATPase_c 1.5e-23 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00846 4 6523357 6530271 Phco4g00846 4 6523357 6530271 ECH
Phco4g00846 4 6523357 6530271 Phco8g00384 8 3488314 3494939 PCT