Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00554 ATGGTTTTGTCATGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCTGGTAACGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGGCCACGGGAATAACCTACGACAGAGACAGCATCGAGAAGTGGATTGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGACCAGCTTTGAGATGATCCCGAACCATTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCCACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGACCCCGTACGAGGTTACTGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAATGTGTGGAATTGGTGAGGAAGATTAAGGCCTGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTAGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCTCTTTCTGAAGATGGTAGATCCGTGTTGGGTTCAGCGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTTAAGGAAATGCGCGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTTGAAGCTTTGGTTAACATGGTTAAGGAGCCTGTTGGGAATGCTTCCTCCAAGGCATGTTTGTCAACGATTTTTAAGTTGTTGGTTAATTCTTCAGGAAGTAATAGAGGTCTGACTCGCGAGAGATTCGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGCTTCTTGTTGATGCTGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGTCTTTGTGATTGTAAACAAGGGGTGGAGATGGCTAAAAGTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGGGGTGTTGATTGAGGCTCTTCAAATTGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAGGCTACGGAGTTGTTGAAATTATTTAATGGTTGCAGGAGCAAAGCTGAGTGTGTTGACTCCTCCTTGGATTTCAAGCACTTGAAGAACCCTTCTAATTGA 1314 0.4924 MVLSWTRGRVFRRARKGKELSSGNDLEIEIAIPTHFRCPVTLDMMKDPVTMATGITYDRDSIEKWIESGNRTCPVTKTELTSFEMIPNHSIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVTDTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSASSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVFEALVNMVKEPVGNASSKACLSTIFKLLVNSSGSNRGLTRERFVELGLVSVLLELLVDAERGVCEKALGVLDCLCDCKQGVEMAKSNALTLPLVIKKLLRVSELSSSFAVSVLWKVCDKTEEGVLIEALQIGVFHKLLVLLQVGCAEGTKEKATELLKLFNGCRSKAECVDSSLDFKHLKNPSN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00554 437 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Phco3g00554 437 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Phco3g00554 437 SUPERFAMILY ARM repeat 126 400 IPR016024 -
Phco3g00554 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Phco3g00554 437 PANTHER WDSAM1 PROTEIN 29 423 IPR045185 GO:0061630
Phco3g00554 437 CDD RING-Ubox_PUB 33 85 IPR045210 -
Phco3g00554 437 Gene3D - 125 423 IPR011989 -
Phco3g00554 437 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Phco3g00554 437 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Phco3g00554 437 SUPERFAMILY RING/U-box 27 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00554 Phco-Chr3 4343353 4344666 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00554 3 4343353 4344666 Phco3g00554 3 4343353 4344666 ECH
Phco2g02615 2 55889150 55890490 Phco3g00554 3 4343353 4344666 PCT