Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03028 ATGCTATGGTCTTGGAGAGCTACCTTGTGTGATCTTATCCACTGTTTGGTGGAGTTATCTGAAAAATATCCTCACCACTGTAGCATTGGTCAGGCGCAGCTGGAGATAGCTCATATAACCATATTCATATTCAAAGTTGTTGTCAGTACTCAATATCTCCATTTCCCTAAACCTGTCCCTTCTTTATCACATATATATACACTCCTTCTTCCAACACATCCCTTCACAACACAACACAACACAACACAAAACACAACATTTACATCTCTCTCCAATATGGCTTCTACTAGTAATGAGTTTTATGCGCTTCTGCTAGCGGTGCTGGTTGGCTCCATGGTGGCTGAATGTGGTGCTAACTTCTACCAAGACTTTGATCTAACATGGGGTGACCACCGTGCTAAGATATTCAGTGGTGGTCAGCTTCTATCTCTTTCTTTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGGAGGATCGATATGCAGCTCAAACTCGTCGCTGGCAACTCTGCTGGCACTGTTACTGCTTACTACTTGTCATCTCAGGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGCGACCCCTATATTCTCCATACAAACGTGTTCACCCAAGGCCAAGGGAACAGAGAGCAACAGTTCTATCTCTGGTTCGATCCCACCAGAAACTTTCACACCTACTCCATCATCTGGAAGCCCCAACACATTATCTTCTTGGTGGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTGCTGGTGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTATTCTAGCCTGTGGAATGCTGATGACTGGGCAACTAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCATTTACAGCATACTACCGCAATTTCAAAGCCACAGGGTTCTCCGTGTCTTCCAATTCATTGTCTGATGCTGCATGGCAGAGCACCGAGCTTGATGCCTACGGCAGAAGAAGACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGACCTCAAGCGATTCCCACAAGGCCTTCCTGCTGAGTGCAAGCGCTGA 1113 0.4555 MLWSWRATLCDLIHCLVELSEKYPHHCSIGQAQLEIAHITIFIFKVVVSTQYLHFPKPVPSLSHIYTLLLPTHPFTTQHNTTQNTTFTSLSNMASTSNEFYALLLAVLVGSMVAECGANFYQDFDLTWGDHRAKIFSGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETAGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATGFSVSSNSLSDAAWQSTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECKR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03028 370 ProSitePatterns Glycosyl hydrolases family 16 active sites. 194 204 IPR008263 GO:0004553|GO:0005975
Phco2g03028 370 Gene3D - 106 370 - -
Phco2g03028 370 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 115 368 IPR044791 GO:0004553
Phco2g03028 370 FunFam Xyloglucan endotransglucosylase/hydrolase 107 370 - -
Phco2g03028 370 SUPERFAMILY Concanavalin A-like lectins/glucanases 119 369 IPR013320 -
Phco2g03028 370 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 326 368 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Phco2g03028 370 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 114 308 IPR000757 GO:0004553|GO:0005975
Phco2g03028 370 CDD GH16_XET 117 368 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco2g03028 370 PRINTS Glycosyl hydrolase family 16 signature 152 170 IPR008264 GO:0004553|GO:0005975
Phco2g03028 370 PRINTS Glycosyl hydrolase family 16 signature 210 223 IPR008264 GO:0004553|GO:0005975
Phco2g03028 370 PRINTS Glycosyl hydrolase family 16 signature 228 245 IPR008264 GO:0004553|GO:0005975
Phco2g03028 370 Pfam Glycosyl hydrolases family 16 121 301 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03028 Phco-Chr2 58863211 58865482 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g03028 2 58863211 58865482 Phco2g03028 2 58863211 58865482 ECH