Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02942 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGCTTGCGAGTTCTCGTTGTGGATGATGATCCCACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTGGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTCCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTATAGAAAAAGGATACACGAGGCTAAAGAATTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTAATGACAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCTGATAACAAACTCGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGATCTGATGAATGTTCCATGGCTGACCAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGAAGATCTACCTCGAGCGGAATGAAGCATTCAGATTTTCCTTCGAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAATTGACAGCTACAATTATTCGGATGGATCATTACAGCTGCCGAACGTGGAAAATAAAAGTCATGAAGGAGATAAGGGAACTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCTTTGGCTGGTAGCATCGCCGACTCAAATATGAGAGAGAGTTCAAGGGTTGGCCTTCAGCAACCTTTTTCCCAGTCGGAAGGAAGCCATGCAGTGTTTGATTGCTCCATGCCGACACAGTACTCTTGGACTGAAGTTCCACACACGCAACTCAAAGAAGAACACAAGTCACATGTTCATTTAGAAGATAGCTTCAATCAGATGCCATTACATGGTAAGCAGCATCCCATCCAAGTTGATCAATCACAATCAGTTACTTCAATTAGTTCAGCTCCCTCTATAAGGGAGGAAGGGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGCCAGTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAACAATCTCGGTAGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCCATTGGCTACAAGTTGATTGTTATAATATGAACTTTGGTCTGCAGAATATAGGAATGCCAGAATATTATGATCCAGGACTTATTGCAGAAGCTCCGAGTCACCTATATGATTCATCCGATTACTCGGTTATGGATCAAGGTCTATTCATAGCATGA 1734 0.4095 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVYRKRIHEAKEFESFESFESIHLMTNGSELSDEGNLFAVEDVTSTKKRKDADNKLDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSTSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSIDSYNYSDGSLQLPNVENKSHEGDKGTVSQFTIAKKGRPLAGSIADSNMRESSRVGLQQPFSQSEGSHAVFDCSMPTQYSWTEVPHTQLKEEHKSHVHLEDSFNQMPLHGKQHPIQVDQSQSVTSISSAPSIREEGVAACIEAKPLFSDFKNDQSSSVNSIGNAVDTFPIQPGSLVMNAQSLASSTTNSGLKAHGYNNLGSISDLEIYQRNLLLGGEAASAPLDEDLHFHWLQVDCYNMNFGLQNIGMPEYYDPGLIAEAPSHLYDSSDYSVMDQGLFIA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02942 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 339 IPR045279 GO:0009736
Phco2g02942 577 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Phco2g02942 577 Gene3D - 195 258 - -
Phco2g02942 577 SUPERFAMILY CheY-like 16 145 IPR011006 -
Phco2g02942 577 FunFam Two-component response regulator 195 258 - -
Phco2g02942 577 CDD REC_typeB_ARR-like 19 133 - -
Phco2g02942 577 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
Phco2g02942 577 Gene3D - 17 188 - -
Phco2g02942 577 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Phco2g02942 577 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Phco2g02942 577 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Phco2g02942 577 SMART REC_2 17 129 IPR001789 GO:0000160
Phco2g02942 577 MobiDBLite consensus disorder prediction 261 288 - -
Phco2g02942 577 PIRSF RR_ARR_type-B 2 537 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco2g02942 577 FunFam Two-component response regulator 17 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02942 Phco-Chr2 58355150 58358870 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco2g02942 Response_reg 1.5e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02942 2 58355150 58358870 Phco2g02942 2 58355150 58358870 ECH
Phco2g02942 2 58355150 58358870 Phco4g02061 4 40824924 40829039 PCT