Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02615 ATGGTGTTGTCTTGGACTAGAAGAAACGTTTTCCGTCGTGCCAAGAAGGAGAAGGAACAGATTCAAGGTGATGCTTGTGGTGGTGAGTTGGAGGTGGAGGTTGTCATCCCCAACCACTTTCGGTGTCCGGTGAGTTTGGAGTTGATGACGGACCCGGTCACTTTATCTACCGGCATCACCTACGACAGGGTCAGCATTGAGAAGTGGATTGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAACCTTTGACACCATCCCCAACCATGTCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGCTCTTATGGGTTTCAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTTCGAGGTTTCTCAGACATGTATGAGGATCTTGTCCGCTTGTCAGCGTGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGTTTGGGGGAGAGATGAGAGGAACAAGAGGTGCATAATTGGGAATCATTCTAGAACCGATGCTGCTAATAGTCCCGATGCAGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTGGTGACTCTTTTGACAAGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTCACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCATGGCCTGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGTGTGTTCAAGAATTGGCCAAAGTTGGAACAATTGTTGAAGCTTTGGTTACTATGATCAGGGAGCCTATTGGGAGTGCTTCCACCAAGGCTTGTTTGACAACAATTTTTAACTTGGTGTCATCTGCTGAGAACAGAGGGGAAATTGCTCAAAAATTTGTGGAATTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATATCCAGAAGGGGAAGGAGGTTGTTAAAAACAATGCTCTTACTTTGCCTCTTGTCGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTACAAGTTTTGCTGTCTCTATTCTTAAGAAGAATTCTGACAAGAAGGAGGAAGAGGCTCTGATTGAGGCAGTTCAACTAGGGGCTTTTCAAAAGCTCTTGGTTTTGCTGCAGGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACAGAGTTGTTGAAACTGTTGAACGGTTATAGGAACAAAGCCAAGTGCACTGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4571 MVLSWTRRNVFRRAKKEKEQIQGDACGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTTFDTIPNHVIRRMIQDWCVENSSYGFQRIPTPRIPLSSFEVSQTCMRILSACQRGDDKKCQELVGKIKVWGRDERNKRCIIGNHSRTDAANSPDAVLAYAFDCFSSGDSFDKHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCMAWFLEGKDLASRQSAALLLRQVCVQELAKVGTIVEALVTMIREPIGSASTKACLTTIFNLVSSAENRGEIAQKFVELDLVSLLLEAIVDGEKGVCEKALGVLDCICDIQKGKEVVKNNALTLPLVVKKLLRVSPLATSFAVSILKKNSDKKEEEALIEAVQLGAFQKLLVLLQVGCDESTKENATELLKLLNGYRNKAKCTDSSSDFKYLKKSF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02615 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Phco2g02615 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Phco2g02615 446 SUPERFAMILY RING/U-box 31 111 - -
Phco2g02615 446 SUPERFAMILY ARM repeat 126 426 IPR016024 -
Phco2g02615 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Phco2g02615 446 PANTHER WDSAM1 PROTEIN 33 432 IPR045185 GO:0061630
Phco2g02615 446 CDD RING-Ubox_PUB 37 88 IPR045210 -
Phco2g02615 446 Gene3D - 222 433 IPR011989 -
Phco2g02615 446 FunFam RING-type E3 ubiquitin transferase 36 108 - -
Phco2g02615 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02615 Phco-Chr2 55889150 55890490 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02615 2 55889150 55890490 Phco2g02615 2 55889150 55890490 ECH
Phco2g02615 2 55889150 55890490 Phco3g00554 3 4343353 4344666 PCT