Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00437 ATGGCCCATCATCCCATCCCATCCCATCTAATCTATAAAAAGGCACCTGCTCCCTCCTACTCGGCTGCATCCATCATCTATGCTCTTCTTTTTCTCTCTCTCTTCTCACTCTCACACAAACCAAAATTAAATTCAATCAATAATATTATGGCTCCCAGGGACAAGACCACTGCCGTTAAGGTCAACACTAACGGTAACGCCGGAGTCAAGGAGGCGCATTTTCGAGGAGTCAGGAAGAGGCCCTGGGGGAGATACGCCGCTGAGATTAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACGGCGGAGGAAGCGGCGCGTGCCTACGACGCCGCTGCTCGCGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCATCCCCATCCGATAATAATGTCAAGAACGCCAGCCCCAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGATGTCGCCGCCGATTCCTCCCCGCTTGACCTCAACCTCGCCCCAGCCGCGGTCTCCGCTGCCCGCTTCCCCTTCCAGCAACAGTTCCCCGTTTTTCCGGCGGCGGCCAACCAGGTTTTGTACTTCGACGCTGTCTTACGCGCCGGTTTGGGCGGTCCACGTGGCTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAGTGAGTTCCACGCGACGACGAGCGACTCCGACTCGTCCTCCGTCATCGATCTGAACCACAACGAAGGCGATGTTAAGGGAAACGGTTCTAGAATTTTCGATCTTGACCTTAACCACCCTCCACCACAGGAGATGGCCTGA 813 0.572 MAHHPIPSHLIYKKAPAPSYSAASIIYALLFLSLFSLSHKPKLNSINNIMAPRDKTTAVKVNTNGNAGVKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSPSDNNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQQQFPVFPAAANQVLYFDAVLRAGLGGPRGFGFGYNQHPVAASEFHATTSDSDSSSVIDLNHNEGDVKGNGSRIFDLDLNHPPPQEMA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00437 270 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 MobiDBLite consensus disorder prediction 131 154 - -
Phco11g00437 270 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Phco11g00437 270 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Phco11g00437 270 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 56 228 - -
Phco11g00437 270 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Phco11g00437 270 MobiDBLite consensus disorder prediction 121 162 - -
Phco11g00437 270 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00437 Phco-Chr11 2945739 2946551 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phco11g00437 AP2 2.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00437 11 2945739 2946551 Phco11g00437 11 2945739 2946551 ECH
Phco9g01822 9 42485292 42485870 Phco11g00437 11 2945739 2946551 ECH