Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00429 ATGGACGAAAGTTGGAGTGAGGGGAAAAGGAGCATGAATTACAAGGATGATGACGATGATTATGAGGAAGAGGAAGAGGAGGAGGGCACTGAGTACGGAGAGGATGGTAGGAAGAAGAGGGTGGTGCCAAACAAGAGAGCCTCCAAAGCTGGTGGCTCAATGCCACCTTCATGTCAAGTTGATGGCTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCCGTACTCATTGCAGAGCACCACCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTCGATGAATCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATATGGGCATTGA 417 0.4772 MDESWSEGKRSMNYKDDDDDYEEEEEEEGTEYGEDGRKKRVVPNKRASKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEHHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00429 138 PIRSF SBP 6 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Phco11g00429 138 MobiDBLite consensus disorder prediction 17 31 - -
Phco11g00429 138 FunFam Squamosa promoter-binding-like protein 14 49 119 - -
Phco11g00429 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 133 IPR044817 GO:0003677
Phco11g00429 138 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Phco11g00429 138 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Phco11g00429 138 MobiDBLite consensus disorder prediction 1 16 - -
Phco11g00429 138 Pfam SBP domain 58 131 IPR004333 GO:0003677
Phco11g00429 138 MobiDBLite consensus disorder prediction 1 62 - -
Phco11g00429 138 SUPERFAMILY SBT domain 56 135 IPR036893 GO:0003677|GO:0005634
Phco11g00429 138 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00429 Phco-Chr11 2866646 2868202 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco11g00429 SBP 1.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00429 11 2866646 2868202 Phco11g00429 11 2866646 2868202 ECH
Phco11g00429 11 2866646 2868202 Phco9g01836 9 42734300 42735606 ECH
Phco9g01836 9 42734300 42735606 Phco11g00429 11 2866646 2868202 ECH
Phco4g02636 4 47738084 47739184 Phco11g00429 11 2866646 2868202 PCT