Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01648 ATGGATCCAAACACTGCCATGAGCGGCTACGACTTTGATGAGTGGGATCTCAATGGACACTACACCAACCTCGTCACTGATCCTTTTTTCTTTCAGTCCGATGTGGGCCCACCTGCGTTTTCTCCGAATACAATCCTAAACTCCGACCCGCTTGTTTCATCCTCCGCCGCCTCCACCGCTGTGGTGGCTACGGTTGAGGAAGACACTGACTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTAATGGAAGAGAACTTTGAACAGAAACCGTGCATGTGCTATGACCCTTTGACTCTGCAACACACTGAGAAATCCTTCTATGATGCTTTGGAATTGGAACCGCCACTGCCTCATTCCCCGAATCAGCACCCGCTTGAGAGCCCTGATGGTAATTCTTCCAATTCCACCACTGATTCAGCCAATTCTCAGGACTTTAAGCCTTCTTCACCCAATACACCTGTTTCTGATGGTGGCGATGCTTTGCATTCCTCTACGCACGCGCCCTCTTTCTTTGTTCCTCCGTCTGCTTTGACTAAAATTAACGAGGGAACCCTGGATTTGGATTCTTCTGTGAGCAAGCTTTTGGCTGAAAATATTTTCAGCGATGCAGATTCTATGTTGCAGTTTAGGAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCAGAGACCTCAGCTTTTCACTGGGTTCGAGAGCACCACGGTTTCTGCGGAACCAAAGGTAGGAGGGGACTTAACTGTGAAGCAGGAGAATTTAATTGGGGAGAAGAGTAGAAAGAATCACGCGCGCCAAGATGAAGAAGAAGGAAGAAGCAACAAACACTCCGAGGTTTGTGTTGATGAGGAGAATGAAATATCTGAAATATTTGATAAGGTGTTGCTTAGTGTTGAAAATGTTCCACTGTGTGCTGAGAAGAATGTATCTGTGGCAGTGGGAGATAGTAACGCAAAGCTGAGAGATCCACCGGCTTCGGTTGATGGAGGGAAGGTTCGTTCCAAGAGGCAAGGGAAGAAGAAGGAAACAGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCGCAAGCTGTGTCTGCCAGTAACAACAGGACTGCTAATGAACTATTGAAGCAGATTAGGCAGCATTCTTCTGCCTTGGGTGATGCCTCACAAAGGTTGGCTCATTATGTGGCCAATGCTTTGGAGGCTCGCTTGGTTGGTGCTGGAACTGGAACACAGATATTTTATATGAGCTACAAGAAATTCACTACTACTGATTACCTGAAAGCTTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTAGCAAATAAAATGATTATTAAAACAGCAGAAAAGGCAGAAACTCTTCATATTATTGACTTTGGTATCTTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAGTTGGAGGGCCTCCCAAGCTGCGGATCACAGGAATAGAGTATCCCCAACCCGGCTTTCGCCCATCTGAAAGAATCGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAAGCGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCTAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGCAATGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGATGAATCAATTGAAGTGAGCAGTCCCAAAAATGCTGTTCTGAATTTAATCAGGAAGATGAATCCGCATATTTTTGTTGACGCCGTGGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCAAGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACTCTCATATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTTGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAGAGGGTTGAGAGGCCAGAGACATACAAACAGTGGCAGGTTAGGAATACTAGAGCTGGTTTTAGGCAGCTCCCACTGGACAAGGAGTTAATGGCCAAATTTAGAGGCAAGTTAAGGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATGGCAGCTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCGTCTTGTTGGGTGCCAGCATAA 2163 0.4457 MDPNTAMSGYDFDEWDLNGHYTNLVTDPFFFQSDVGPPAFSPNTILNSDPLVSSSAASTAVVATVEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPPLPHSPNQHPLESPDGNSSNSTTDSANSQDFKPSSPNTPVSDGGDALHSSTHAPSFFVPPSALTKINEGTLDLDSSVSKLLAENIFSDADSMLQFRRGLEEASKFLPQRPQLFTGFESTTVSAEPKVGGDLTVKQENLIGEKSRKNHARQDEEEGRSNKHSEVCVDEENEISEIFDKVLLSVENVPLCAEKNVSVAVGDSNAKLRDPPASVDGGKVRSKRQGKKKETVDLRTLLVLCAQAVSASNNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYMSYKKFTTTDYLKAYQVFISACPFKKFAHFLANKMIIKTAEKAETLHIIDFGILYGFQWPILIKFLSSRVGGPPKLRITGIEYPQPGFRPSERIEETGRRLAKYCKRFNVPFEYKAIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPKNAVLNLIRKMNPHIFVDAVVNGSYNAPFFVTRFKEALFHYSSIYDMFDTLISRENEWRLMLEREFFGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRGKLREWYHKDFVFDEDGSWMLQGWKGRILYASSCWVPA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01648 720 MobiDBLite consensus disorder prediction 246 277 - -
Phco10g01648 720 MobiDBLite consensus disorder prediction 113 168 - -
Phco10g01648 720 MobiDBLite consensus disorder prediction 252 277 - -
Phco10g01648 720 MobiDBLite consensus disorder prediction 125 160 - -
Phco10g01648 720 ProSiteProfiles GRAS family profile. 336 718 IPR005202 -
Phco10g01648 720 Pfam GRAS domain family 345 717 IPR005202 -
Phco10g01648 720 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 271 713 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01648 Phco-Chr10 39152932 39155094 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco10g01648 GRAS 8e-113 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01648 10 39152932 39155094 Phco9g00713 9 5269819 5272152 PCT
Phco9g00712 9 5260439 5262442 Phco10g01648 10 39152932 39155094 PCT