Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00682 ATGTCGCATACGTCCGGCGTAGATGCCTTCGCCGATCGCTTCCGCCACTCGCTCAGCTGCAACAACGACACCGGCAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCCCCGGTGTCGCCATTGCGTACCACGCGCGCCCCGGCCGCGAGTACCAGCTCAAGCTCATCTGGGTCCTTCTCGGGTCGAACCGGGCCCAACCAGGTTTCCCGAAAGCCCGAATCTTCGCACACCAATAGTAACACTAACAACAGCAGTAGTACCAACAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGCGAGAACAGCCCCACCGCCCGTGGTTTCAAACCGGGTCATACGAGATCCGACTCTGGATCCACGCCGGGGCCGCTGCTATACTCCGGCCAGACTGCTACTTCGCCGGCGATGAATGTTCTCCCCACCGGGAACATCTGTCCCTCCGGGAAGATCTTGAAGACGGGGATGGGGATGGTACCGAATCGGAGTAGTAGAAGCGATGTTTTGGGGTCCGGCATGGGGAACTACGGCCACGGGAGCATAATGCGCGGCGGCGGAAAGGCGGAGCCGGTGAGCTCACGCGGCGGTGGCAATGAGGCAGTGAAGAGAGGTGGGCACGTGCAGAGTGTGGATCCAGAGGAATTGAAGAGATTGGGGAATGAGTGTTATAAAAGAGGGAACTTTACTGATGCGTTGAGTCTTTACGATCGCGCGATTGCGATATCGCCGGCAAGTGTCGCTTACCGGAGCAACCGCGCAGCGGCGCTGACCGGGCTGGGACGTTTGGATGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTAGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGCCACCAAGGGATGCAGCCAGATCCATCAGAGATACAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTGAGGAGGATAGGGGATTGGAAGAGTGTTCTCAGGGAGGTTGATGCTGCCGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTTCCATATACCTAAATCAGAGTTGCACACTAGTTCCACTTCTCAGGCAAGATTTTTTGGGATGGTTTCTGAGGCCTATTTCTATTTTGTCAGAGCACAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCCGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCCGGAGTGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGGGCTCGAGTACGTGGCAATGATCTCTTTAAATCTGAAAGGTACACCGAAGCTTGCTCCGCGTATGGGGAAGGTTTGAGACTGGACCCTTCCAATTCTGTACTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGGCAGTGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACTCATCCAACCAAATTACACCAAGGCCCTTCTTCGGAGGGCTGCATCAAACAGCAAGCTAGAACGGTGGGAGGAAGCCGTCAAAGATTATGAGATCTTGCGGAGAGAACTTCCAAATGATAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGTGGGGAAGTGGAAGAAGTATCAGGTCTGGAGCAGTTTAGAGCTGCAATATGTTTACCAGGTGTATCTGTTGTGCATTTTGAAGTTGGATCTAACTCACAATGCAAACAAATATCACCATTTGTCGATACACTATGCGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAGCCCAACAGTTGGTACTGCGGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTTTGCCCCAGTCGTGAGATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2064 0.5048 MSHTSGVDAFADRFRHSLSCNNDTGNINKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGPNQVSRKPESSHTNSNTNNSSSTNNNNNSGELSGSSENSPTARGFKPGHTRSDSGSTPGPLLYSGQTATSPAMNVLPTGNICPSGKILKTGMGMVPNRSSRSDVLGSGMGNYGHGSIMRGGGKAEPVSSRGGGNEAVKRGGHVQSVDPEELKRLGNECYKRGNFTDALSLYDRAIAISPASVAYRSNRAAALTGLGRLDEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCHQGMQPDPSEIQRLQVVEKHISKCGDVRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAETVLFHIPKSELHTSSTSQARFFGMVSEAYFYFVRAQIEMALGRFENAVTAAEKASQIDPRSVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALLIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAICLPGVSVVHFEVGSNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTVGTAENVRIVPTFKIYKNGSRVKEIVCPSREMLEHSVRHYSF 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00682 687 CDD TRX_family 592 676 - -
Phco10g00682 687 Gene3D Tetratricopeptide repeat domain 213 573 IPR011990 GO:0005515
Phco10g00682 687 Gene3D Glutaredoxin 580 686 - -
Phco10g00682 687 SMART tpr_5 249 282 IPR019734 GO:0005515
Phco10g00682 687 SMART tpr_5 407 440 IPR019734 GO:0005515
Phco10g00682 687 SMART tpr_5 521 554 IPR019734 GO:0005515
Phco10g00682 687 SMART tpr_5 487 520 IPR019734 GO:0005515
Phco10g00682 687 SMART tpr_5 453 486 IPR019734 GO:0005515
Phco10g00682 687 SMART tpr_5 215 248 IPR019734 GO:0005515
Phco10g00682 687 Pfam Tetratricopeptide repeat 409 438 IPR019734 GO:0005515
Phco10g00682 687 MobiDBLite consensus disorder prediction 183 208 - -
Phco10g00682 687 ProSiteProfiles TPR repeat profile. 407 440 IPR019734 GO:0005515
Phco10g00682 687 MobiDBLite consensus disorder prediction 17 143 - -
Phco10g00682 687 SUPERFAMILY Thioredoxin-like 490 685 IPR036249 -
Phco10g00682 687 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 23 684 IPR044534 -
Phco10g00682 687 FunFam TPR repeat-containing thioredoxin TTL4 579 686 - -
Phco10g00682 687 MobiDBLite consensus disorder prediction 46 143 - -
Phco10g00682 687 SUPERFAMILY TPR-like 215 442 IPR011990 GO:0005515
Phco10g00682 687 Pfam Thioredoxin 602 677 IPR013766 -
Phco10g00682 687 Pfam Tetratricopeptide repeat 221 281 - -
Phco10g00682 687 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00682 Phco-Chr10 8090409 8093385 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00682 10 8090409 8093385 Phco10g00682 10 8090409 8093385 ECH
Phco10g00682 10 8090409 8093385 Phco9g01790 9 41935162 41938322 PCT