Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00680 ATGGCCAACAGTAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCTTCCCCCTCGGAAGACAACATGAGATATTTCAATGTCATGATCCTTGGCCCGACTCAGTCACCTTATGAAGGTGGAGTTTTTAAACTAGAATTATTTTTGCCAGAAGAATATCCGATGGCTGCTCCTAAGGTTAGGTTTCTGACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGGATATGTCTTGACATTCTGAAAGACAAGTGGAGTCCTGCCCTTCAGATTCGTACTGTACTTTTGAGTATTCAAGCTCTTCTAAGTGCACCCAACCCAGATGACCCTCTCTCAGAGAACATTGCCAAGCATTGGAAAACTAACGAGGCTGAGGCTGTGGAAACAGCCAAGGAATGGACTCGGTTATATGCCATTGGCGCCTAA 462 0.4502 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAIGA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00680 153 FunFam Ubiquitin-conjugating enzyme E2 36 1 152 - -
Phco10g00680 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 33 138 - -
Phco10g00680 153 SMART ubc_7 8 151 - -
Phco10g00680 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Phco10g00680 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Phco10g00680 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Phco10g00680 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Phco10g00680 153 CDD UBCc 7 146 IPR000608 -
Phco10g00680 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00680 Phco-Chr10 8082141 8088620 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00680 10 8082141 8088620 Phco10g00680 10 8082141 8088620 ECH
Phco10g00680 10 8082141 8088620 Phco9g01791 9 41947178 41952020 PCT