Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00675 ATGGCGAACCGGAACATGGAAAAGATGGCATCCATTGATGCACAGCTTCGACAATTGGCTCCTTCCAAAGTGAGTGAGGATGACAAACTGATTGAGTATGATGCTCTTCTGCTGGATCGGTTCCTTGATATTCTGCAGAATTTACACGGGGAGGATCTGAAAGAAACAGTTCAAGAAGTGTACGAACTTTCGGCTGAATATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATGTGATAACTAGTTTGGATGCAGGGGACTCTATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTGGCTGAGGAGGTCCAGATTTCTCGCCGCCGTAGGAACAAGTTGAAGAAGGGGGATTTTGCAGATGAGAACAATGCAACTACTGAATCAGACATTGAAGAAACTCTTAAGAAACTTGTATTTGAATTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAGTTCGGAGATCTTTGCTTCAAAAGCATGCAAGGATAAGGAATAGTTTATCTAAATTGTATGCCAAAGACATAACTCCTGATGATAAGCAGGAGCTTGATGAGGCCCTGCAAAGGGAGATTCAAGCTGCCTTCCGTACAGATGAAATCAGGAGGACTCCTCCAACACCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAACGGTGTTCCCAGATTTCTGCGCCGTGTTGATACAGCTTTGAACAATATAGGAATTAAGGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGTGATGGTAATCCAAGAGTGACTCCTGAGGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTACTATTCCCAGATAGAAGATCTCATGTTTGAACTCTCTATGTGGCGCTGCAACGATGAACTACGCGTTCATGCAGATGAGGTTCACAGGTCTTCTAATAAAGATGAAGTTGCAAAACACTATATAGAATTTTGGAAAAAGGTTCCCACAAATGAACCATATCGTGTGGTACTTGGTGAAGTGAGGGATAGGCTCTATCAGACTCGTGAGCGTTCGCGCCATTTACTATCAAATGGGTACTCTGAAATTCCAGAGGAAAACACTTTCACCAGTGTTGAGGAGTTCCTGCAACCTCTTGAACTTTGTTACAGATCACTGTGTGCTTGTGGTGATCGAGCAATTGCTGATGGAAGCCTTCTTGATTTCTTGAGACAAGTCTCCACTTTTGGACTGTCAATAGTAAGGCTAGATATCAGGCAAGAGTCAGATCGTCACACTGATGTCTTGGATGCCATTACCAAACACTTGGAAATTGGCTCCTACCAGGAATGGTCTGAAGAGAAAAGGCAGGAATGGTTGTTGTCCGAATTAAGTGGCAAAAGGCCACTATTTGGACCTGACCTTCCTCAAACTGAAGAAATCAGGGATGTTTTGGACACATTTCATGTGATAGCTGAACTGCCACCAGATAACTTTGGAGCCTATATCATATCAATGGCAACAGCACCATCTGATGTGCTGGCAGTTGAGCTTCTACAACGTGAATGTCATGTCAAGCACCCATTAAGAGTTGTGCCATTGTTTGAAAAGCTAGCTGATCTAGAGGCTGCTCCTGCTGCTTTGGCACGGTTGTTCTCTGTAGACTGGTATAAAAATAGGATCGATGGGAAGCAAGAAGTGATGATTGGATACTCAGATTCAGGAAAAGATGCTGGGAGGTTCTCTGCAGCATGGCAGCTATATAAGGCTCAAGAGGAACTTGTAAAGGTTTCCAAGAAATTTGGTATTAAGCTAACCATGTTCCATGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATTCTGTCTCAACCTCCAGACACAATCCATGGATCACTTCGTGTGACAGTCCAAGGTGAAGTTATTGAGCAGTGCTTTGGAGAACAACACTTGTGTTTTAGAACACTACAACGTTTCACTGCTGCCACACTAGAACATGGCATGAACCCCCCGATTTCTCCAAAACCAGAATGGCGCGATATGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGATCTATTGTGTTCAAGGAACCGCGCTTTGTTGAGTATTTCCGCCTGGCTACACCAGAGTTGGAGTATGGCAGGATGAATATTGGAAGTCGACCAGCAAAGAGAAGGCCCAGTGGAGGCATTGAAACACTGCGAGCAATACCTTGGATCTTTGCATGGACGCAAACAAGGTTTCATCTTCCAGTGTGGCTAGGCTTTGGAGCAGCATTTAAACAAGTTCTTGATAAAAATGCTAAAAAAAATCTCAGCATGCTGCAAGAGATGTACAACCAATGGCCCTTCTTTAGGGTCACACTTGATTTGGTGGAAATGGTGTTTGCCAAAGGAGATCCAAAAATCGGAGCTCTGAATGATAGGCTCCTTGTTTCAAAGGATCTCTGGCCGTTTGGGGATCAACTGAGGAACAAATATGAAGAAACCAAGAAACTCCTACTTCAGGTGGCTGGACACAAGGAGATTCTTGAAGGGGACCCCTACTTGAAGCAAAGACTCAGACTTCGTCATTCTCCCATTACTACCCTCAATGTTTTCCAAGCTTACACATTGAAACGTATCCGTGATCCTAACTACAAGGTGACGGTACGACCCCGCATATCGAAGGAGTCTGCAGAGACAAGCAAATCAGCTGATGAACTTATAAAACTGAACCCAACAAGTGAGTATGCCCCTGGTTTGGAAGACACCCTCATTCTCACTATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAG 2907 0.4417 MANRNMEKMASIDAQLRQLAPSKVSEDDKLIEYDALLLDRFLDILQNLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNVITSLDAGDSIVVAKSFSHMLNLANLAEEVQISRRRRNKLKKGDFADENNATTESDIEETLKKLVFELKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNSLSKLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWNGVPRFLRRVDTALNNIGIKERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVHADEVHRSSNKDEVAKHYIEFWKKVPTNEPYRVVLGEVRDRLYQTRERSRHLLSNGYSEIPEENTFTSVEEFLQPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSIVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYKNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELVKVSKKFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQCFGEQHLCFRTLQRFTAATLEHGMNPPISPKPEWRDMMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVLDKNAKKNLSMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIGALNDRLLVSKDLWPFGDQLRNKYEETKKLLLQVAGHKEILEGDPYLKQRLRLRHSPITTLNVFQAYTLKRIRDPNYKVTVRPRISKESAETSKSADELIKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00675 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 968 IPR022805 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 Pfam Phosphoenolpyruvate carboxylase 35 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Phco10g00675 968 Coils Coil 104 124 - -
Phco10g00675 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Phco10g00675 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Phco10g00675 968 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 968 IPR015813 GO:0003824
Phco10g00675 968 FunFam Phosphoenolpyruvate carboxylase 1 308 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00675 Phco-Chr10 8006803 8011894 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00675 10 8006803 8011894 Phco10g00675 10 8006803 8011894 ECH
Phco10g00675 10 8006803 8011894 Phco9g01792 9 41956694 41963685 PCT