Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00105 ATGGAAACCAATTTGGGGTTGGTTGCAGGCTCTCACCACAGCAATGAATTCACTATCATACGTCAGGATGGAGTGCAAAGAAGGTTAAAAGAAATAGATGGAAAAAGCTGTGAACTGTGTGGAGATAATATAGGGGTTAATGCAGATGGTGAGCTCTTTGTGGCCTGCAACGAGTGTGCCTTTCCTGTTTGTAAAAGCTGTTATGAGTATGAACGTAGGGAGGGAAACCATGTCTGCCCTCAATGCAAAACAAGATTCAAGCGTCTCAAAGGGTGTGCTAGGGTTGAGGGGGATGAAGAAGACGATGATATTGAGGACTTGGAGAATGAAGAAGATATTGATGGAGGAAATAAACAAGATTTGAAAACGACCATGTCTCATGAGGAACAGGATGAAGAAACTTCTGAAGAACTTCATGCTTTGGTTCCTTCAACTTCAACCACATTGAGCAAAGAGAAGGTTCCATTGCAAGCAAGATCCATGGATCCTTCCAAGGACCTGGCTGCTTATGGCTATGGAAGTGTTGCATGGAAGGAAAGAATGAAGATATGGAAGCAAAGACAAATGGAACTTGGTAATGCGAGAAAAGAAAATGACAAGGAAGATCCAAACAACCTTGTAGATGATGACACCGAATTCCTTATAATGGATGAAGGAAGACAGCCATTATCAAGAAAGTTGTCTGTTCCATCAAGTCAAATTAACCCTTACCGAATGGTCATACTAATCAGGCTAGTTGTTCTTGGATTCTTCTTCCATTACCGAGTTGTGCACCCTGTAGAACATGCCTATGCTTTGTGGCTGGTGTCAATAATTTGTGAAATTTGGTTCACTCTTTCATGGATTCTAGACCAGTTCCCAAAGTGGCTTCCAGTCATGAGAGAAACTTATCTGGACAGGCTTTCCTTGAGGTATGAGAAAGAAGGGAAACCTTCTCAACTTTCTCCAATTGATATATTTGTGATCACAGTAGATCCACTAAAAGAGCCTCCTCTTGTGACTGCAAACACAGTTCTTTCCATTCTAGCCATGGATTACCCTGCTGAAAAGGTGTCATGTTATGTATCTGATGATGGGGCAGCAATGTTAACATTTGAGGCTTTATCTGAAACTTGTGAATTTGCAAAGAAATGGGTTCCTTTTTGTAAGAAGTTTAGCATTGAGCCAAGAGCTCCTGAATGGTACTTTGGTGAGAAGATAAACTACCTAAATGACAAGGTGCACCCATCATTTGTGAAAGAGAGAAGAGCAATGAAGAGAGAATATGAAGAGTTTAGAGTTGGAATTAACTCTCTAGTTGCAAAGTCTAGGAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACTCCATGGCCAGGAAATAATGTTGGTGATCATCCAGGAATGATACAGGTTTTTCTTGGAGAAAATGGAGGATATGACATGGATGGCAAGGAATTACCACGCTTGATATATGTTTCTAGAGAAAAGAGGCCAAAATTCAATCACCCGAAAAAAGCAGGAGCATTGAATGCATTGGTTAGAGTGTCTGCAGTGCTTTCCAATGCACCTTTTGTGTTGAACTTGGACTATGATCATTACATCAACAATAGCAAGGTTGTAAGAGAGGCAATGTGTTTCATGATGGACCCAGTAGTAGGAAAAAGGGTCTCCTATGTCCAGTTCTCACAGAGATTTGATGGTATTGAGCAACATGCCAATCAAACAAATGGATTCTTTGATATTAACATGAAAGGCTTGGATGGTATACAAGGACCTACATATGTTGGAACAGGATGTGTCTTTAGAAGGCAAGCACTTTATGGTTTTGATTCTCCAAGAAAAAAGAAGCCTCCAACCAAGACATGCAATTGTTGGCCAAAGTGGTGTTGTTGTATGGGGAAGAAGAAGAAGAAGAAGAAGTTAAAGAAACCAAAGTTTGAGATAATGGAAAACAGTCACAGTAAAGTACATTCTGAAGCATCTATAGTTGAAGGTGCTCTGAAATATATTGAACATAGCACAGAAGATGAAACATTAGCTCACATTTCAAATCCAAAGTTTGCCAAGAAATTTGGACAATCTCCTATCTTTATTGCATCTACTCAACTGGTGGAAGGTGAGACACTCAAACATGGAAACCTTGCTTCTCAACTTACAGAAGCAATACATGTCATTAGTTGTGGCTATGAAGAGAAAACAGAATGGGGAAAAGAGGTTGGGTGGATCTATGGTTCAGTTACAGAAGATATATTGACAGGTTTTAAAATGCATTGTCATGGATGGAGATCTATATATAGTATTCCTGAAAGACCTGGATTTAAAGTATCTTCCCCAAGAAACCTTTCTAATGGTTTGCAACAAGTCTTTCAATGGGCCCTTGGATCAATGGAAATATTCATGAGTAAACATTGCCCTCTTTGGTATGGATATGGAGGAGGACTAAAGTGGTTACAACGCATTTCTTATATAAATGCCATAGTATATCCATGGACATCAATACCTTTGGTGGTATATTGTACCCTACCTGCTGTTTGCTTGCTCACTGGGAAATTTATCATTCCTGAGCTCAGCAATACAGCTGGAATGTGGTTTGTGTCTCTTTTCTTCTGCATTTTCACCACAAGTGTGTTAGAGATGAGATGGAGTGGTGTCACAGTTGATGAATGGTGGAGAAATGAGCAATTTTGGGTGATTGGAGGTGTGTCAGCACATTTTCTTGCAGTGTTCTTGGGGATGTTTAAGGTCTTGGCAGGTGTAAATACAAACTTCATAGTGACATCAAGGGAAGATGATGAGAAGCAGCATTCTGACATGTTTGCATTGAATTGGACCACTTTACTGATCATACCAACAACATTGCTGATACTAAACATAATTGCTGTGGTTGCTGGAGTCTCAAATGCAATAAACATTGGCTTTGAGGCTTGGGGACCTCTGCTTGGTAAACTCTTGTTTTCTTTGTGGGTGATTCTTCATTTGTATCCATTCCTCAAAGGCATGGTAGGTAGGCATAGCAGGACTCCTACCATTGTTGTTGTTTGGGCAATCCTTCTTGCCACTTTCCTTTCTGTCTTGTGGGTCAAAATTGATCCATTTTTACCCAAGTCAAGTGGGCCAATTCTAGAGGAATGTGGATTGGATTGCACTTAG 3135 0.4035 METNLGLVAGSHHSNEFTIIRQDGVQRRLKEIDGKSCELCGDNIGVNADGELFVACNECAFPVCKSCYEYERREGNHVCPQCKTRFKRLKGCARVEGDEEDDDIEDLENEEDIDGGNKQDLKTTMSHEEQDEETSEELHALVPSTSTTLSKEKVPLQARSMDPSKDLAAYGYGSVAWKERMKIWKQRQMELGNARKENDKEDPNNLVDDDTEFLIMDEGRQPLSRKLSVPSSQINPYRMVILIRLVVLGFFFHYRVVHPVEHAYALWLVSIICEIWFTLSWILDQFPKWLPVMRETYLDRLSLRYEKEGKPSQLSPIDIFVITVDPLKEPPLVTANTVLSILAMDYPAEKVSCYVSDDGAAMLTFEALSETCEFAKKWVPFCKKFSIEPRAPEWYFGEKINYLNDKVHPSFVKERRAMKREYEEFRVGINSLVAKSRKVPEEGWTMQDGTPWPGNNVGDHPGMIQVFLGENGGYDMDGKELPRLIYVSREKRPKFNHPKKAGALNALVRVSAVLSNAPFVLNLDYDHYINNSKVVREAMCFMMDPVVGKRVSYVQFSQRFDGIEQHANQTNGFFDINMKGLDGIQGPTYVGTGCVFRRQALYGFDSPRKKKPPTKTCNCWPKWCCCMGKKKKKKKLKKPKFEIMENSHSKVHSEASIVEGALKYIEHSTEDETLAHISNPKFAKKFGQSPIFIASTQLVEGETLKHGNLASQLTEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYSIPERPGFKVSSPRNLSNGLQQVFQWALGSMEIFMSKHCPLWYGYGGGLKWLQRISYINAIVYPWTSIPLVVYCTLPAVCLLTGKFIIPELSNTAGMWFVSLFFCIFTTSVLEMRWSGVTVDEWWRNEQFWVIGGVSAHFLAVFLGMFKVLAGVNTNFIVTSREDDEKQHSDMFALNWTTLLIIPTTLLILNIIAVVAGVSNAINIGFEAWGPLLGKLLFSLWVILHLYPFLKGMVGRHSRTPTIVVVWAILLATFLSVLWVKIDPFLPKSSGPILEECGLDCT 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00105 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 110 IPR013083 -
Phco10g00105 1044 Pfam Cellulose synthase 317 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco10g00105 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 331 842 IPR029044 -
Phco10g00105 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 221 1007 - -
Phco10g00105 1044 Pfam Zinc-binding RING-finger 28 103 IPR027934 -
Phco10g00105 1044 CDD mRING-HC-C4C4_CesA 35 85 - -
Phco10g00105 1044 MobiDBLite consensus disorder prediction 98 113 - -
Phco10g00105 1044 MobiDBLite consensus disorder prediction 98 139 - -
Phco10g00105 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 474 609 IPR029044 -
Phco10g00105 1044 SUPERFAMILY RING/U-box 23 105 - -
Phco10g00105 1044 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00105 Phco-Chr10 869093 876294 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00105 10 869093 876294 Phco10g00105 10 869093 876294 ECH