Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04830 ATGGCTATGGCAAAAGAGAAAGCGGAAGATGAAGAGAAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCATGAGGAATGATGAAGAAGATGATGATGGTGTTGAAGCTGTTGAGGAAGAAGATAGTGAGCTTCTTCTGAAGCCAGGGATTTTCTTCTACCCGACAACCCCAACATCCTTTGTTGTCTCTGATGCTCTTGAACCCGATTTTCCCGTCATATATGTCAACAAGATTTTTGAAATCTCCACTGGGTATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTAGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACACCTTTGGTGAACAGATTAAGACTTGCACCAATTCATGACGATGACGGGACCGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGAGTCTCATATCCAGTGTTCAAAGAGACTTGCAATCAAGAGTTTGACAAGAATGGTCAATATTCTCCAAAGAGTGGACAATGTTTGTACAGTCAGCAGCAAGAGATGTGCGGCATTCTGCAGCTTTCCGACGAAGTATTGGCTCACAACATTTTGTCACGCTTGACACCAAGAGATGTTGCATCCATTGGGTCTGTATGTAGGAGAATTCGTCAATTAACAAAGAATGAGCATGTGAGGAAGATGGTATGTCAAAACGCGTGGGGCAAAGAAGTGACCGGCACATTGGAACTGATGACCAAGAAGCTAGGATGGGGTCGCCTGACTCGCGAACTCACCACCCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGCGCAGTGGAGCCTTCGCGCTGCAATTTCAGTGCTTGTGCTGCGGGAAACCGGCTCGTGTTGTTTGGAGGTGAAGGAGTGGACATGCAGCCTATGGATGACACTTTTGTTCTAAATCTCGACGCGAAAAATCCAGAATGGCGCCGGGTTAGCGTGAAATCATCCCCACCTGGAAGGTGGGGCCACACACTCTCGTGCTTAAACGGTTCTTGGTTGGTGGTTTTTGGTGGCTGTGGGAGGCAAGGACTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTATGTGGTGGAACACCACCACTTCCTAGATCATGGCATAGTTCTTGCACAATTGAAGGGTCAAAATTGGTGGTCTCAGGTGGGTGCACTGATGCAGGTGTACTTCTTAGTGACACCTATTTGCTGGATCTGACAAAAGATAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCACCATCTCGGTTGGGGCACTCACTCTCAGTGTATGGGAGGACAAAGCTTCTGATGTTTGGTGGACTTGCCAAGAGTGGACACTTGAGGCTAAGATCAGGTGAGGCTTACACAATTGACTTAGAAGATGAAGAACCACAGTGGAGGCAACTAGAGTATAGTGCATTCACAGGATTAGCAAGTCAAAGTGGTGTTGTTCCTCCTCCTAGGCTGGACCATGTTGCTGTGAGCATGCCTTGCGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTATTGGACCCTTCTGAGGAGAAACCATCTTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAGTTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGCTGGTGTTGGGAGGACACACTGGAGAGGAATGGATACTGAATGAGTTGCATGAGTTGTGCCTGGCAAGTCTGTGA 1875 0.4763 MAMAKEKAEDEEKVQTCGKRLKCMRNDEEDDDGVEAVEEEDSELLLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKIFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQEFDKNGQYSPKSGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTKDNPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSAFTGLASQSGVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04830 624 FunFam Putative LOV domain-containing protein 493 624 - -
Phac2g04830 624 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 40 623 - -
Phac2g04830 624 CDD PAS 56 166 IPR000014 -
Phac2g04830 624 Gene3D PAS domain 53 178 - -
Phac2g04830 624 SMART pac_2 131 172 IPR001610 -
Phac2g04830 624 Pfam Galactose oxidase, central domain 424 475 - -
Phac2g04830 624 Pfam Galactose oxidase, central domain 375 422 - -
Phac2g04830 624 Pfam Galactose oxidase, central domain 310 360 - -
Phac2g04830 624 Pfam F-box domain 216 253 IPR001810 GO:0005515
Phac2g04830 624 Gene3D - 495 620 IPR015915 GO:0005515
Phac2g04830 624 Gene3D - 368 494 IPR015915 GO:0005515
Phac2g04830 624 SUPERFAMILY F-box domain 211 284 IPR036047 GO:0005515
Phac2g04830 624 Gene3D - 205 303 - -
Phac2g04830 624 FunFam Adagio protein 1 49 178 - -
Phac2g04830 624 FunFam Putative LOV domain-containing protein 287 492 - -
Phac2g04830 624 SUPERFAMILY Galactose oxidase, central domain 297 614 IPR011043 -
Phac2g04830 624 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 167 IPR035965 -
Phac2g04830 624 Pfam Kelch motif 534 581 IPR011498 GO:0005515
Phac2g04830 624 NCBIfam PAS domain S-box protein 72 166 IPR000014 -
Phac2g04830 624 Pfam PAS domain 66 166 IPR000014 -
Phac2g04830 624 CDD F-box_AtADO-like 215 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04830 Phac-Chr2 44861131 44864730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04830 59 180 AGC Kinase Gene Family AT5G58140 34.677 2.63e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g04830 2 44861131 44864730 Phac2g04830 2 44861131 44864730 ECH