Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04818 ATGTGTTCGCTGACCCACTTGCGTCCGCTAACATGCGCCGCATCTGCAGCGGCGTCACGATTAGTGCCCTACCCACCGGACCTCGTAAAGTGGGTAACCAGAGAGGGTGGGTTCGTGCACCGCGCGCTGGAGATAGCACAACTCGGTTCATCCAACGGACTCGGCATAGTGGCCAAGGAACAAATTCCACGTGGCACTGACCTAATTGTCCTTCCCCACCACCTTCCCCTGCGCTTTACCACTCTTGAACACGACCCTCTGCTGCATCACTTGGCGCGTCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTCTGGTGGCCCTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTAGCAAGTGTTAAGCCAGATAGCCGTCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGCATTCACTTACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGCAAGAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGACCCTCTGTTACTTTGCTATGGCTGTTTAAACAATGATTTTTTCCTTCTCGATTATGGATTTGTGATGCACTCAAACCCTTATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACAGCAGCCGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGAAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCAAGTAATATGGAAACTGTGCAGAAGTATGACCTCAGTACACTCCAGTCTTTAGATGTTGAAGCTCCTCTTGGTGTTGCAATCGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATTGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAAGAAACAGCAACCGCTGAAGGCTAA 1398 0.4635 MCSLTHLRPLTCAASAAASRLVPYPPDLVKWVTREGGFVHRALEIAQLGSSNGLGIVAKEQIPRGTDLIVLPHHLPLRFTTLEHDPLLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALASVKPDSRPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHLPMMLPLIDMCNHSFNPNARIVQQEDTSSMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQKLILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVVLSSNMETVQKYDLSTLQSLDVEAPLGVAIDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATAEG* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04818 465 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 280 459 IPR036464 -
Phac2g04818 465 SUPERFAMILY SET domain 26 288 IPR046341 -
Phac2g04818 465 FunFam SET domain containing protein 306 459 - -
Phac2g04818 465 Gene3D set domain protein methyltransferase, domain 1 9 283 - -
Phac2g04818 465 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 27 427 - -
Phac2g04818 465 ProSiteProfiles SET domain profile. 41 270 IPR001214 GO:0005515
Phac2g04818 465 SMART set_7 41 276 IPR001214 GO:0005515
Phac2g04818 465 Pfam Rubisco LSMT substrate-binding 319 440 IPR015353 -
Phac2g04818 465 Gene3D - 321 460 IPR036464 -
Phac2g04818 465 CDD SET_LSMT 42 284 - -
Phac2g04818 465 Pfam SET domain 53 270 IPR001214 GO:0005515
Phac2g04818 465 FunFam Histone-lysine N-methyltransferase setd3 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04818 Phac-Chr2 44788639 44791620 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac2g04818 SET 5.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g04818 2 44788639 44791620 Phac2g04818 2 44788639 44791620 ECH