Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3830 ATGGGTCTTCTCTTGAAGATGAAGATGCAGAATCAGCACCACCCTTTGGCTTCTAAGTTACAAGAACAAACGGGGAACAAAAGATACACATTCATTCAAGCACATAGAGCTTGGCTTCTCAAATTAATGTTTCTATGGATTCTTCTGATGGCTCTGATTAGTCGTATCATCTACAGCAAAATGGATGTGGGTACTAAAGTGAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTTTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACGGCTAGGACCGCTTTCGAAAGGCCGCTACTTAGTGGAGTGGCCTATGCACAAAGAGTTGTTAACTCGGAAAGAGAGCAGTTTGAGAAGCAGCATGGAGTGGTTATAAAGACAATGGAAAGAGAGGCTTCACCGGTTAGGGATGAGTATGCACCGGTCATATTTGCTCAGGAAACTGTCTCTTACCTTGAGTCTATTGATATGATGTCTGGAGAGGAGGATCGAGAGAACATAATGAGAGCTAGAGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTCGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCCAACCCAACAACAGAAGAGCTCATTAAAGCGACCGCAGGATATGTTGGAGGATCCTTTGATGTGGAGTCACTTGTGGAAAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTCAATGTATATGATGTCACGAACTCTTCTGATCCCCTAATCATGTATGGCAACCAATACGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCGCCAAATTGGACAGCACTTTCTACTGCAATCCTATTCTTTGTGATTCTTCTTTTAATCGGTTACATTTTATATGGTGCTGGGAATCATATTGTCAAAGTAGAGGATGATTTCCACGAAATGCAGGAGCTAAAAGTTCGAGCAGAGGCAGCCGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCTATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACGGAATTGAACTCAACTCAACGGGACTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCAAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCGGTTCCATTTGACCTTCGTTCCATACTCGATGATGTCCTCTCTCTTTTTTCAGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATTGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGCCATATATTTGTTAAAGTTCATTTATCTGAAAACAGAAAGCCCGTAACAAATGGAAAGCATGAGACTTATCGAAATGGAGGGTCTGAAGAAGTTGTGCATGCATCTGGCGGTTATAATCTCAAAACGCTAAGTGGATATGAAGCTGCTGATGAACGCAACAACTGGGATAATTTTAACCACTTAATTGCTGATGAAGAGTTTTTCTGCGATGCTTCAACTAAAAAAGTGGCCTCGAATGAATTTTATGAACAAGTCACCTTGATGGTCTGTGTCGAAGACACTGGAATTGGAATTCCTTTCTCGGCCCAAGATAGGATTTTCATGCCTTTTGTTCAGGCAGATAGCTCGACTTCTAGAAATTATGGTGGTACCGGCATTGGTTTGAGTATCAGTAAGTGCCTAGTTGAACTAATGGGTGGTCAAATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACCTTTTCATTTACTGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGGTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGGGAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGTTAAAGTCGCAAATGCCATCAATAAGGCTGTTTCCTTGTGTGGGAAAAATGGGGCTTCCAGCACAGGGTTATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGAGGACGGGATCTTCAGTGTGCGCCAACTGGACTGGAAACAGAATGGACATATATTTAAGATGCCTCAAATGATCCTTCTAGCTACAAATATTAGTAATGACGAATTTGATAAAGCTAAATCCGCAGGTTTTAGTGATACGGTGATCATGAAGCCACTGAGAGCTAGTATGGTGGGAGCTTGCCTTCAGCAAGTTTTGGGAACAGGCAAGAAGAGACAGCTGGGAAAAGAGATGCCTAATGGTTCAACTTCAGTTCGAAGCCTTCTGTTCGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTAAACCGGAGGGTGGCTGCAGGTGCCTTGAAAAACTTTGGAGCGGATGTGAAGTGTGCAGATAGCGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAAGTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGTCGAATTCGGGAGATGGAGAGGACAGCGAATGAGGAGACGAATAGTGAATGTGGTGAAAGGAAAAGTGAATTCCATTTACCTATATTGGCCATGACAGCAGATGTAATCCATGCTACATATGAAGAGTGTTTGAAATGTGGGATGGATGGTTATGTTTCAAAACCTTTTGAGGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCCAGACAAAACCTACTTCAGTAGATTCATGA 3012 0.4177 MGLLLKMKMQNQHHPLASKLQEQTGNKRYTFIQAHRAWLLKLMFLWILLMALISRIIYSKMDVGTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMEREASPVRDEYAPVIFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQVKVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGFEATRRIREMERTANEETNSECGERKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPTSVDS* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3830 1003 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 997 - -
Mtr8g3830 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155|GO:0007165
Mtr8g3830 1003 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Mtr8g3830 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 675 IPR036890 -
Mtr8g3830 1003 SUPERFAMILY CheY-like 701 836 IPR011006 -
Mtr8g3830 1003 CDD REC_hyHK_CKI1_RcsC-like 863 990 - -
Mtr8g3830 1003 Coils Coil 433 453 - -
Mtr8g3830 1003 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Mtr8g3830 1003 Gene3D - 699 839 - -
Mtr8g3830 1003 Gene3D - 857 1000 - -
Mtr8g3830 1003 SMART HKATPase_4 495 680 IPR003594 -
Mtr8g3830 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 678 IPR003594 -
Mtr8g3830 1003 SUPERFAMILY CheY-like 860 995 IPR011006 -
Mtr8g3830 1003 Pfam CHASE domain 113 293 IPR006189 -
Mtr8g3830 1003 SMART CHASE_2 110 295 IPR006189 -
Mtr8g3830 1003 Gene3D - 447 683 IPR036890 -
Mtr8g3830 1003 PANTHER HISTIDINE KINASE 4 24 997 - -
Mtr8g3830 1003 Gene3D - 61 113 - -
Mtr8g3830 1003 Gene3D - 357 446 - -
Mtr8g3830 1003 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Mtr8g3830 1003 Pfam Response regulator receiver domain 863 990 IPR001789 GO:0000160
Mtr8g3830 1003 ProSiteProfiles Histidine kinase domain profile. 390 680 IPR005467 -
Mtr8g3830 1003 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Mtr8g3830 1003 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Mtr8g3830 1003 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Mtr8g3830 1003 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Mtr8g3830 1003 ProSiteProfiles Response regulatory domain profile. 705 835 IPR001789 GO:0000160
Mtr8g3830 1003 ProSiteProfiles Response regulatory domain profile. 862 994 IPR001789 GO:0000160
Mtr8g3830 1003 CDD HATPase_EvgS-ArcB-TorS-like 500 678 - -
Mtr8g3830 1003 SMART REC_2 861 990 IPR001789 GO:0000160
Mtr8g3830 1003 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Mtr8g3830 1003 Gene3D CHASE domain 114 329 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3830 Mtr-Chr8 48953023 48959487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3830 25 1003 Histidine Kinase Gene Family AT2G01830 71.385 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g3830 HATPase_c 2.6e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3830 8 48953023 48959487 Mtr8g3830 8 48953023 48959487 ECH