Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3828 ATGAATATTTTGAAGAAAACCATAAATGCTCCTGTTACTTTTCAATGGACAGATCCTGATGTATGTAAATGGAAACACGTTAATTGTGATTCAAGAAAACATGTCATTGCAATTCAAATAGGGAACCAAAATCTTCAAGGCTTTCTCCCGAAGGAACTTGTGATGTTAACAACATTACAAAAGTTCGAGTGTCAAAGAAACGGCCTCACCGGTCCATTCCCTTACCTCTCAAAATCACTACAGAGGCTTCTAATCCACGACAACAAATTTAGCTCTCTTCCTAACAATTTCTTCACGGGAATGAGCAATTTGCAAGAAGTAGAAATCGACAACAACCCTTTGCCTCCATGGCAAATTTCTAATTCTCTTAAAGACTGTGTTGCACTCCAAACTTTCAGTGCTGAAAGTGTTAGCATTGTTGGGACTATTCCAGATTTTTTTGGCAGAGATGGTCCCTTCCCTGGATTAGTTTTTTTGGCACTGTCTGGTAATTCATTAGAAGGTGTTTTGCCTGCAAGTCTTTCTGGAAGTTCAATAGAGAACCTTTTGGTCAATGGACAAAATAGCAACAATAAACTCAATGGTACCCTTATTGTGTTACAAAACATGACATCTTTGAAACAAATATGGGTTAACGATAATTCATTTACAGGTCCTATACCCGATTTATCACAGCTTAACCAACTATCTGATGTGAATTTAAGGGATAACCAGTTGACTGGTGTTGTTCCACCTTCTTTAATGAACCTACCAAGCCTGCAAGTGGTAAATTTAACAAACAATCGTCTCCAAGGTCCACCTCCCAAGTTTAGAGACGGTGTTGGAGTGGATAATATTATCGGTGGGGGTAGAAATGAATTTTGCACAAATGTTCCAGGGCAACCATGTAGTCCTCTTGTGAATATTTTGCTATCAGTTGTTGAACCTTTGGGTTATCCTCTTAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCTTGTGCCAATAAATGGATAGGTATAGTTTGTTCTGGTGGAAATATTTCAATTATCAATTTTCAGAACATGGGACTAAGTGGAACTATTTCTCCAAATTTCGCTAGTCTTTCTTCTTTAACAAAGCTACTTATTGCAAACAATGATATTACAGGTGCCATACCTAATCAACTTACTAGTATGCCTCTTCTACAAGAATTAGATGTTTCTAATAATAATTTGTATGGTCGCGTGCCATCGTTTCCAAAAGGTGTGGTTCTTAAAATTGGTGGGAATCCTGATATTGGGAAGGATAAACCCATCACTCCATCTGCAAGTAGCCATGGGTTTGGAAAAGACAACGACAAAGACGAAGACAAAAACAAAAACAGTGTTGACGGCGTCAATGTTGGAATTGTGTTAGGGGTTGTCTTTGTACTTGGAATTGGGGTGATAATATTATTTATGTTTTGGAAAAGGTCAAGGAATCATACGAAGAAAGGTAAAAAACCTGATGCAATAACAATACATTCTAGTTATAAAGGTGGTGAAAATGTTGTGAAGGCGAGTGTTGTTGTTAGTGGTGGAGGAAATGATGCCTTAAGTCCCACTTGTAATGCTTACGAAGTTAGCAACATGGTGATTTCGATTCAAGTTTTGAGACAAGTTACAAATAACTTTAGTGAGGAAAAGATAGTCGGGAAAGGTGGTTTTGGTATTGTGTACAAAGGGGAGTTGCACGATGGCACACAAATTGCAGTGAAAAGGATGCAATTAGGAATGATGGGCGAAGGATCAAATGAATTCACGTCTGAGATTGAAGTGCTTACAAAGGTTCGACACAAACATTTGGTTTCACTCTTAGGGTATTGTTTGGATGAGAATGAGAAACTTTTGGTTTATGAGTACATGACTAGAGGTGCTTTAAGCAAACACTTGTTTGATTGGAAAGAGGAAGGGATAAAACCGTTAGAATGGAAGACACGACTTAGTATTGCTTTAGATGTTGCTAGAGGTATTGAATATCTTCATGGGTTAACCCAACAAATTTTTATCCACAGGGATATCAAACCATCTAACATTTTGCTTGGAGAAGACATGCGAGCAAAAGTATCTGACTTTGGATTGGTTCGGCTTGCTCCTGAAGGAAAAGCTTCATTTCAAACCAGACTTGCCGGAACTTTTGGATATATGGCACCAGAGTATGCATCAACGGGAAGACTAACAACCAAGGCCGATGTATATAGTTTTGGTGTGGTTCTTATGGAGATCATAACAGGAAGGAAAGCACTTGATGGTAGCCAACCAGAAGAGAATATCCACCTTGTTACATGGTTTTGTAGGATGTTACTAAATAAGGATTCATTTCAATCAATGATTGATAGGACAATTGAGGTTGATGAAGAAACATATGCAAGCATAAACACAGTTGCTGAGTTGGCCGGACATTGTAGTGCAAGGGAGCCTTATCAGCGTCCTGACATGAGTCATGTTGTGAACGTGTTATCATCCCTTGTTGAAGTGTGGAAGCCTACAAAACAGGATGTTGATGACATATACGGGATTAACTTTGATATGACATTGCCGGAAGCTCTTAAAAGATGGCAGGCTTTTGAAGGAAGTAGCACCCTCGATTTAACCCTTTCTCCTTCGACAATGAATACGAGTGGAGGCAGCACACAGACTTATCAATCTTCAAACGCGTCTTCACATGCACAAATGTAA 2676 0.3886 MNILKKTINAPVTFQWTDPDVCKWKHVNCDSRKHVIAIQIGNQNLQGFLPKELVMLTTLQKFECQRNGLTGPFPYLSKSLQRLLIHDNKFSSLPNNFFTGMSNLQEVEIDNNPLPPWQISNSLKDCVALQTFSAESVSIVGTIPDFFGRDGPFPGLVFLALSGNSLEGVLPASLSGSSIENLLVNGQNSNNKLNGTLIVLQNMTSLKQIWVNDNSFTGPIPDLSQLNQLSDVNLRDNQLTGVVPPSLMNLPSLQVVNLTNNRLQGPPPKFRDGVGVDNIIGGGRNEFCTNVPGQPCSPLVNILLSVVEPLGYPLKFAESWQGNDPCANKWIGIVCSGGNISIINFQNMGLSGTISPNFASLSSLTKLLIANNDITGAIPNQLTSMPLLQELDVSNNNLYGRVPSFPKGVVLKIGGNPDIGKDKPITPSASSHGFGKDNDKDEDKNKNSVDGVNVGIVLGVVFVLGIGVIILFMFWKRSRNHTKKGKKPDAITIHSSYKGGENVVKASVVVSGGGNDALSPTCNAYEVSNMVISIQVLRQVTNNFSEEKIVGKGGFGIVYKGELHDGTQIAVKRMQLGMMGEGSNEFTSEIEVLTKVRHKHLVSLLGYCLDENEKLLVYEYMTRGALSKHLFDWKEEGIKPLEWKTRLSIALDVARGIEYLHGLTQQIFIHRDIKPSNILLGEDMRAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYASTGRLTTKADVYSFGVVLMEIITGRKALDGSQPEENIHLVTWFCRMLLNKDSFQSMIDRTIEVDEETYASINTVAELAGHCSAREPYQRPDMSHVVNVLSSLVEVWKPTKQDVDDIYGINFDMTLPEALKRWQAFEGSSTLDLTLSPSTMNTSGGSTQTYQSSNASSHAQM* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3828 891 Gene3D Transferase(Phosphotransferase) domain 1 621 842 - -
Mtr8g3828 891 MobiDBLite consensus disorder prediction 863 891 - -
Mtr8g3828 891 MobiDBLite consensus disorder prediction 420 446 - -
Mtr8g3828 891 SUPERFAMILY L domain-like 302 406 - -
Mtr8g3828 891 CDD STKc_IRAK 550 822 - -
Mtr8g3828 891 Gene3D Ribonuclease Inhibitor 1 289 IPR032675 -
Mtr8g3828 891 SMART serkin_6 544 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3828 891 SUPERFAMILY Protein kinase-like (PK-like) 526 828 IPR011009 -
Mtr8g3828 891 Gene3D Ribonuclease Inhibitor 299 423 IPR032675 -
Mtr8g3828 891 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 885 - -
Mtr8g3828 891 SMART LRR_typ_2 385 412 IPR003591 -
Mtr8g3828 891 SMART LRR_typ_2 250 272 IPR003591 -
Mtr8g3828 891 SMART LRR_typ_2 78 100 IPR003591 -
Mtr8g3828 891 SMART LRR_typ_2 153 176 IPR003591 -
Mtr8g3828 891 Gene3D Phosphorylase Kinase; domain 1 514 620 - -
Mtr8g3828 891 Pfam Protein tyrosine and serine/threonine kinase 547 819 IPR001245 GO:0004672|GO:0006468
Mtr8g3828 891 SUPERFAMILY L domain-like 4 271 - -
Mtr8g3828 891 PANTHER OSJNBA0070M12.3 PROTEIN 1 885 - -
Mtr8g3828 891 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Mtr8g3828 891 Pfam Leucine rich repeat N-terminal domain 4 30 IPR013210 -
Mtr8g3828 891 Pfam Leucine rich repeat N-terminal domain 303 336 IPR013210 -
Mtr8g3828 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Mtr8g3828 891 ProSiteProfiles Protein kinase domain profile. 544 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3828 Mtr-Chr8 48930580 48933785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3828 35 832 Receptor kinase-like Gene Family AT1G55610 29.691 1.23e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Mtr8g3828 PK_Tyr_Ser-Thr 7.2e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3828 8 48930580 48933785 Mtr8g3828 8 48930580 48933785 ECH