Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3827 ATGTCCGTGCCACCGGTGCAGTGTGTATTCATAACAGAAGACTGTGTTCGCGAATGGAAGAGTTCCAACAACGCTTCTTTCAAACTCTCCCAACCCGTTCCATTGCTCAGATTCCTCTATGAACTCTCTTGGACTATGGTTCGAGGTGAATTACCGTTTCCCAAGTGTAAATTAGCGTTAGATTCTGTTGTATTTTCGGATAAAGCTTCTCCTCACAAAATTGCATCAAATTTTGCGGATATAGTTAGCCAGATGGCTCAAGATCTTACATTGTCAGGAGAGTTTCGTTCTCGCCTCATTAAACTGGCAAGATGGCTTGTAGAATCTGAATTGGTTCCAGTTAGGCTACTTCAAGAACGTTGTGAGGAAGAATTTTTGGGGGAGGCTGAATTTATCAAAATTAAGGCTCAGGAGTTAAAGGGAAAAGAGGTCAGAGTTAATACACGACTTCTTTACCAGCAAACGAAATTCAACCTTCTCAGAGAAGAAAGTGAGGGCTATGCCAAACTGGTCACTCTTCTTTGTCGGGACTCTGAAGCGCCAACTCAAAAAGGATCTACATCAACAATTGGCATTATTAAGTCATTGATTGGCCATTTTGATTTGGATCCAAACCGTGTTTTTGATATTGTACTTGAGTGTTTTGAACTTCAGCCTGATAATGACGTGTTTATAGAGCTGATTCCTATTTTTCCCAAGTCTCATGCTTCACAGATTCTTGGATTTAAATTTCAATATTATCAGCGCATGGAAGTCAGCAATCCTGTACCATATGGGCTTTATAGACTTGCAGCTCTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATTTACGCTCATTTACTCCCCAAGGACGTAGAAGCATTTGAGCATTATAGCACTTTCTCTTCCAAGCGCCTTGATGAGGCTAATAAAATTGGAAAAATCAACCTAGCTGCTACTGGAAAAGATCTAATGGACGAGGAGAAAACGGGGGATGTCACCATTGATCTCTTTGCCGCCTTAGCCATGGAAACTGATGCAGTTGACGAGCGGAAATCCGAGCTTCAAAACAATCAAACTTTGGGCTTGCTTATTGGCTTCCTTTCTGTAGATGACTGGTATCATGCACATGTACTGTTTGAACGCCTCTCAGCACTCAATCCAGTGGAACATATCCAAATATGTGATAGTTTGTTTAGGCTTATTGAGAAGTCAATTTCTTCCCCGTATGATGTTATTCGTCAAGCACATCTTCAAAACTCTGGATTGTCCACTGGAGGCAGCACTGATGCTATGGATGTTGATAACCCTTCAGGACACAATTCTTTCATAGATCTTCCAAAGGAACTTTTTCAGATGCTTGGTTGTACTGGACCTTTTCTCTACCGAGATACTATGCTGTTACAGAAGGTTTGCAGGGTGTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTAAGTCAGGGCGGTGCCTTGAATCCTCAATTTCATGTTGGAAATCCTAACCTACATTTGAAGGAAGCAAGGCTAAGAGTGGAGGATGCTTTAGGAGCTTGTCTACTACCTTCTCTACAGCTGGTTCCTGCTAATCCAGCTGTTGGCCAGGAAATTTGGGAACTAATGAGTCTTCTTCCTTATGAGGCACGATATCATTTATATGGTGAATGGGAAAAAGATGACGATCGCTATCCTATGCTGTTGGCTACGAGACAAACAGCCAAGTTGGACACTAGACGTATTTTGAAACGGCTGGCAAAGGAAAATTTGAAGCAGCTGGGTCGGATGGTTGCAAAATTAGCTCATGCCAACCCTATGACTGTCCTTCGAACAATTGTTCACCAGATTGAGGCATACAGAGACATGATAACTCCTGTAGTGGATGCGTTTAAGTATTTAACTCAGCTTGAATATGATATATTGGAATACGTTGTGATTGAGCGATTGGCACTTGGAGGACGTGATAAGTTGAAGGATGACGGGCTTAACTTGTCAGACTGGCTTCAATCTCTAGCTTCTTTCTGGGGCCACCTATGTAAGAAGTACCCATCAATGGAATTGCGGGGCCTTTTCCAGTATCTTGTGAACCAGTTAAAAAGGGGACAAGGAATTGAGCTTGTTCTATTGCAGGAGCTCATCCAACAAATGGCAAATGTTCAGTACACAGAGAACTTGACGGAGGAGCAGCTGGACGCTATGGCAGGGAGTGAGACTCTGAAATATCAAGCAACTTCTTTTGGGATGACCCGAAATAATAAGGCATTGATAAAGTCAACTAGCAGACTTAGAGATGCATTACTTCCGAAAGATGAACCGAAGTTGGCAACCCCCCTCTTGCTTCTTCTTGCTCAACATCGTTCTCTGGTTCTCGTCAATGCAGATGCACCCTACATCAAGATGGTCAGCGAACAGTTTGATAGATGCCATGGAACTCTCCTTCAATATGTGGATTTTCTAGGCAGTGCAGTCACACCAGGATCAAATTATGCTATTCTTATTCCCTCTCTTGATGACTTGATCCATCTTTACCACTTGGACCCTGAGGTTGCTTTCTTGATATATCGCCCTGTTATGAGACTTTTCAAGTCTCAGAAGACTCCCGATGTTTGCTGGCCCATGGAAGATAAATATTCTGCAAGTGATTCATCCACAAACTTTGAGCCTGACCCTACAGATTATTCTGGTAGTATGGTTCTAGATATTGGCTCCAACAAAAATCCCATTAGTTGGTCAGATCTTCTTGATACTGTTAAAACCATGTTGCCTCCAAAAACATGGAATAGCCTATCTCCCGATCTTTATGCAACATTTTGGGGTCTTACATTATATGACCTGCACGTTCCAAAAAACCGTTATGAGTCAGAAATAGCCAAGCTGCATGCTAATCTTAAATCTTTGGAGGAGCTTTCTGACAATTCAAGCTCAGCAATCACCAAGAGGAAGAAAGAAAAGGAAAGAATTCAAGAATCTCTTGATCGTCTGAGTAGTGAACTGCATAAACATGAAGAGAACGTCGTATCTGTCAGCAGGCGGCTTTTTCATGAGAAAGACAAATGGTTAAGTTCCTGTCCTGATACCTTGAAGATTAACATGGAGTTTCTTCAGCGTTGTATATTTCCACGCTGTACTTTCAGTATGCCAGATGCTGTCTATTGTGCTATGTTTGTACACAAACTTCATTCCCTTGGAACCCCTTTTTTTAACACAGTCAACCACATTGATGTTCTTATTTGCAAAACCCTTCAACCAATGATATGCTGCTGCACTGAATATGAGGTTGGCAGGCTTGGCAGGTTTCTCTATGAGACTTTGAAGATTGCTTACCATTGGAAGAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCGGGATTTGCTGTTTATTATAGAAATCCTAACGGCCAGCGAGTTACATATGGACAGTTCATTAAGGTACACTGGAAATGGAGTCAAAGAATCACACGGTTACTAATTCAGTGTCTAGAATCTAGCGAGTACATGGAGATTAGAAATGCTCTTATAATGTTGACTAAAATTTCTAGTGTTTTTCCTGTTACACGGAAGAGTGGGATAAACCTTGAAAAGCGGGTAGCTAAGATTAAAAGTGATGAAAGAGAGGATCTTAAGGTGTTGGCAACTGGTGTAGCAGCAGCACTGGCTGCTAGGAAGCCATCCTGGGTTACCGATGAAGAATTTGGTATGGGTTATCTTGAATTGAAGCCTGCACCATCTATGACTAAATCTGCAGCGGGAAATTCTGCCGCTGTACAAAGTGGGATAGGTCTTCAATTTTCTCAAACTGAATCTGCCAGTGGGAAACATCTGGACTCCGGAAACACAGTCAAAGACCAGACAGTAAAAACAAAAACTGCAGATGGGAAGTCAGAGAGAACTGAAAGCCTTACAGCGACAAAATCTGATTCTGGCCACGGAAAACTCAAGGGTAGCTCAATGGTGAATGGAGTGGATGCACAATCATCTCTAGCCTCACCTGCTGGACAATCTGGGGCATTAAAATCTGTGGAAAATCAAAAGCAAGTGGAAGAATCCATAAGTAGGGCACCGGATGAACACATTACAAGAAATGTTGAGTCAAGACCCTCTGTGAAACAACGTTCAGTGGCTACTGGTTCACTTTTGAAGCCATCAAAACAAGATCCTTTGAAAGAAGATGGTAGATCTGGAAAAACTGTTACCAGAACTTCTGGTTCCTCAAGCAGTGACAAGGATCTTCAGACCCATGCATCAGATGGAAGACACACAGGAACAAACATTTCTTCTTCATTTAGTGCTAATGGTAACAGTGTTTCAGGTTCTGCAAAAGGTTTGGCTCAAGCGGCAACAACTGCATTTGATGGTTCTGGTAACGAATCAAAGGCAGAGGTTGGAGCTGCCAAATTTTCTATGGTGAAGGATGATGTAAATGAGTTTGCTGACTTCACAAGAGGATCCTCTTCTCGTGTAGTTCATTCTCCTAGGCATGAAAACACAGCTACCTCAAAGTCTAGCGATAAAATTCAGAAGCGAGCTGGTTCTGTTGATGAGCTAGACAGACTAGGTAAACGACGGAAAGGGGATATAGATCTAAGAGATTTAGAAGGTGAAGTTCGATTTTCTGAAAGAGAAAAGCTGATGGATCCTCGATTGGCTGATGACAAAGTGGGACCAGATGAACTTGGTGTATACAGAACAGGTGATAAAACATTGGAAAGGCCTAAAGAAAAAGGCACTGATAGATATGAAAGGGAACACAGGGAAAGATTGGATCGTCTGGACAAGTCTCGTGGTGATGACTTTGTTGTAGAAAAACCCAGGGACAGGTCGATAGAAAGATATGGAAGAGAACGGTCTGTGGAGAGAGTGCAAGAAAGGGGTAGTGAGAGGAGTTTCAATAGACTCCCTGACAAGGCTAAGGATGATAGAAGTAAGGATGATAGAAATAAATTACGATACAATGATGCAACAATAGAAAAATCTCATGCTGAGGGCCGCTTCCATGGACAAAGCTTGCCTCCGCCACCCCCTTTACCTCCTAATATGGTTCCTCAATCTCTTGGGGCTGGTAGGCGTGATGAAGATGCTGATAGGAGGTATGGAGCTACAAGGCATTCTCAAAGACTTTCTCCAAGGCATGAAGAAAAAGAACTGAGACGGTCTGAAGAGACTGTGATTTTGCAGGATGATCCCAAACGTAGAAAAGAAGATGATTTTCGTGATCGGAAGCGTGAAGAAATGAAGGTGGAAGAGAGGGAAAGAGAGAAAGCAAGCATTCTAAAAGAAGAGGATTTAAACGCTGCATCCAAGAGGCGTAAACTTAAGAGGGAGCATCTACCAACTATGGAGCCTGGGGAGTACTCACCAGTTGCACCTCCTCTCTCCGGTATTGGTATGTCACAAGCGTATGATGGAAGAGACAGAAAGGGGCCAATGATTCAGCATGCCAGTTACATAGATGAACCGAGTCTTAGGATTCATGGTAAAGAGGTAGCCAGCAAGCTGAATCGTCGTGAATCAGATCCCTTGTATGACCGTGAATGGGATGATGAGAAGAGACAAAGAGCTGATCAAAAGAGAAGGCATCGGAAGTAA 5577 0.4253 MSVPPVQCVFITEDCVREWKSSNNASFKLSQPVPLLRFLYELSWTMVRGELPFPKCKLALDSVVFSDKASPHKIASNFADIVSQMAQDLTLSGEFRSRLIKLARWLVESELVPVRLLQERCEEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAPTQKGSTSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSHASQILGFKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDVEAFEHYSTFSSKRLDEANKIGKINLAATGKDLMDEEKTGDVTIDLFAALAMETDAVDERKSELQNNQTLGLLIGFLSVDDWYHAHVLFERLSALNPVEHIQICDSLFRLIEKSISSPYDVIRQAHLQNSGLSTGGSTDAMDVDNPSGHNSFIDLPKELFQMLGCTGPFLYRDTMLLQKVCRVLRGYYLSALELVSQGGALNPQFHVGNPNLHLKEARLRVEDALGACLLPSLQLVPANPAVGQEIWELMSLLPYEARYHLYGEWEKDDDRYPMLLATRQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLKYQATSFGMTRNNKALIKSTSRLRDALLPKDEPKLATPLLLLLAQHRSLVLVNADAPYIKMVSEQFDRCHGTLLQYVDFLGSAVTPGSNYAILIPSLDDLIHLYHLDPEVAFLIYRPVMRLFKSQKTPDVCWPMEDKYSASDSSTNFEPDPTDYSGSMVLDIGSNKNPISWSDLLDTVKTMLPPKTWNSLSPDLYATFWGLTLYDLHVPKNRYESEIAKLHANLKSLEELSDNSSSAITKRKKEKERIQESLDRLSSELHKHEENVVSVSRRLFHEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHKLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEVGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRNPNGQRVTYGQFIKVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSMTKSAAGNSAAVQSGIGLQFSQTESASGKHLDSGNTVKDQTVKTKTADGKSERTESLTATKSDSGHGKLKGSSMVNGVDAQSSLASPAGQSGALKSVENQKQVEESISRAPDEHITRNVESRPSVKQRSVATGSLLKPSKQDPLKEDGRSGKTVTRTSGSSSSDKDLQTHASDGRHTGTNISSSFSANGNSVSGSAKGLAQAATTAFDGSGNESKAEVGAAKFSMVKDDVNEFADFTRGSSSRVVHSPRHENTATSKSSDKIQKRAGSVDELDRLGKRRKGDIDLRDLEGEVRFSEREKLMDPRLADDKVGPDELGVYRTGDKTLERPKEKGTDRYEREHRERLDRLDKSRGDDFVVEKPRDRSIERYGRERSVERVQERGSERSFNRLPDKAKDDRSKDDRNKLRYNDATIEKSHAEGRFHGQSLPPPPPLPPNMVPQSLGAGRRDEDADRRYGATRHSQRLSPRHEEKELRRSEETVILQDDPKRRKEDDFRDRKREEMKVEEREREKASILKEEDLNAASKRRKLKREHLPTMEPGEYSPVAPPLSGIGMSQAYDGRDRKGPMIQHASYIDEPSLRIHGKEVASKLNRRESDPLYDREWDDEKRQRADQKRRHRK* 1859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1283 1299 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1263 1282 - -
Mtr8g3827 1858 Pfam THO complex subunit 2 N-terminus 440 589 IPR032302 -
Mtr8g3827 1858 Pfam THO complex subunit 2 N-terminus 36 417 IPR032302 -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1536 1660 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1393 1435 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1263 1435 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1477 1492 - -
Mtr8g3827 1858 Coils Coil 943 963 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1536 1858 - -
Mtr8g3827 1858 Coils Coil 1734 1756 - -
Mtr8g3827 1858 PANTHER THO COMPLEX SUBUNIT 2 11 1770 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1477 1521 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1345 1361 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1816 1850 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1362 1376 - -
Mtr8g3827 1858 PANTHER THO2 PROTEIN 11 1770 IPR040007 GO:0000347|GO:0006397|GO:0006406
Mtr8g3827 1858 Pfam Transcription- and export-related complex subunit 591 666 IPR021726 -
Mtr8g3827 1858 Coils Coil 971 1005 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1493 1521 - -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1684 1776 - -
Mtr8g3827 1858 Pfam Transcription factor/nuclear export subunit protein 2 920 1214 IPR021418 -
Mtr8g3827 1858 MobiDBLite consensus disorder prediction 1300 1344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3827 Mtr-Chr8 48908686 48928689 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3827 8 48908686 48928689 Mtr8g3827 8 48908686 48928689 ECH