Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3810 ATGGTGAAAGCAGCAACATCGAGCGAGAAGGGTGGTTCTGGTTCTGGTTCTGGTTCGGTGGCACCTTTCTTGAACAAGTGTTACGATATGGTTGAAGATCCTTCTACCGACTCCATAATCTCATGGTCCGCTGATAGTAACAACAGTTTCATCATCTCCAACGCTGATCAATTCTCACTCACTCTTCTCCCTAATTATTTCAAACACAATAATTTCTCCAGCTTCGTCAGACAACTCAATATCTATGGCTTCAGAAAAATTGATGCAGATCACTGGGAATTTGCCAATGAAAACTTCATTAGGGGTCAAAAGCATTTGCTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCTGCAGATCAGCAAAAACCATTGCCACCAAAAGACAACCGCGATGAACCATCACAAGAAGCAGTAAATCATGGCCTTTGGAGAGAAGTTGAGAATCTAAAATCGGATAGAAAAACCCTCACGCAGGAGTTGGTCAAACATAAGCAGCACCTTGAATCTTCTGAGAGTAAGCTGCTTCTACTGAGTGACCGCCTTGAAGGAATGGAAAAGCATCAGCAGCAGATGCTCTCATTCTTGGTCATGGTCGTGCAATGCCCTGGATTCTTGGTTCAGCTGCTTCACCCTAAGGAAAATAACTGGCGTTTTTCTGAAGCAGGGAATATGTGGGACCAAGGTAACCAAGATGACAGACCAGTTTCTTCTGATGGGATGATTATAAAGTATACACCACCTGTTGCTGAAAAACTAAAACCTGTTGTTCCACGATCTCCTGCCTTTAATAAGCAACCAGAACCTGAGGTTTCTACGGATGGGTTAAAAGACCTGTGCATCAGTTCTGAGTTCTTGAAACTGCTTCTAGATGAGAAATTGTGTCCATTAGATAATCATTCTCCGTTTCTTGTACCTGATTTACCAGATGACGGTTCGTGGGAACAACTATTTTTAGGCAGTCCTATCCTCAAAAATGTTGAAGATACTGATCGTGAAAACGAGGAGCAAACTGTTAGTGACACGGAGATGGATCACATCATATCTGAAGCTCTAAATGAAACATCTGATTTTGAAGCGATGATTATAGAAATGGAGAACACTCACGCATGA 1116 0.4211 MVKAATSSEKGGSGSGSGSVAPFLNKCYDMVEDPSTDSIISWSADSNNSFIISNADQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHPHVAADQQKPLPPKDNRDEPSQEAVNHGLWREVENLKSDRKTLTQELVKHKQHLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLVQLLHPKENNWRFSEAGNMWDQGNQDDRPVSSDGMIIKYTPPVAEKLKPVVPRSPAFNKQPEPEVSTDGLKDLCISSEFLKLLLDEKLCPLDNHSPFLVPDLPDDGSWEQLFLGSPILKNVEDTDRENEEQTVSDTEMDHIISEALNETSDFEAMIIEMENTHA* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3810 371 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 Gene3D - 16 114 IPR036388 -
Mtr8g3810 371 Coils Coil 148 175 - -
Mtr8g3810 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 355 IPR027725 -
Mtr8g3810 371 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 Pfam HSF-type DNA-binding 23 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 SMART hsfneu3 19 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr8g3810 371 MobiDBLite consensus disorder prediction 113 139 - -
Mtr8g3810 371 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
Mtr8g3810 371 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 13 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3810 Mtr-Chr8 48751986 48754723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3810 20 323 HSF AT1G67970 46.885 3.43e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr8g3810 HSF_DNA-bind 3e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3810 8 48751986 48754723 Mtr8g3810 8 48751986 48754723 ECH