Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3803 ATGGCTATGGCAAGAGATAAAAAAGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAGGTTGGGAAGAGATTGAAATGCATGAACATGATGAAGAATGAACAAGAAGAAAATCAAGTAGTTGATGAAGAAGAAAGTGAGCTTCCATTAAAACCAGAACTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGTAACTGCCGGTTCTTACAATATAGGGATCCTAGAGCTCAGAGACGGCATCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGTGAACTTTTGAATTTCAGAAAGGATGGTACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAGGCAAACATAGACTTGAACCGCGTTTCTTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGGAAATTATTGTACACTCCGCAGAAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATCGGTTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGTCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCATCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAAGGAAGTTTTCGGTGAAGCACCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCTGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGCGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATAGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTAGACTAGATCATGTTGCCGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAACTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTACTAAATGAGTTGCATGAGTTATGCTTGGCAAGTCGACAAGACTCTGACATGTGA 1908 0.4355 MAMARDKKEDEEEVHNQNQKVGKRLKCMNMMKNEQEENQVVDEEESELPLKPELFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPQKREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3803 635 Pfam Galactose oxidase, central domain 381 428 - -
Mtr8g3803 635 Pfam Galactose oxidase, central domain 430 481 - -
Mtr8g3803 635 Gene3D - 294 496 IPR015915 GO:0005515
Mtr8g3803 635 CDD PAS 60 170 IPR000014 -
Mtr8g3803 635 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g3803 635 SUPERFAMILY Galactose oxidase, central domain 303 620 IPR011043 -
Mtr8g3803 635 Pfam PAS domain 70 171 IPR000014 -
Mtr8g3803 635 Pfam Kelch motif 540 587 IPR011498 GO:0005515
Mtr8g3803 635 Pfam Galactose oxidase, central domain 316 366 - -
Mtr8g3803 635 PANTHER ADAGIO PROTEIN 3 16 633 - -
Mtr8g3803 635 SUPERFAMILY F-box domain 216 274 IPR036047 GO:0005515
Mtr8g3803 635 TIGRFAM sensory_box: PAS domain S-box protein 73 170 IPR000014 -
Mtr8g3803 635 SMART pac_2 135 176 IPR001610 -
Mtr8g3803 635 MobiDBLite consensus disorder prediction 1 24 - -
Mtr8g3803 635 Gene3D PAS domain 57 182 - -
Mtr8g3803 635 Gene3D - 497 630 IPR015915 GO:0005515
Mtr8g3803 635 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 16 633 - -
Mtr8g3803 635 SUPERFAMILY PYP-like sensor domain (PAS domain) 64 171 IPR035965 -
Mtr8g3803 635 Gene3D - 216 266 - -
Mtr8g3803 635 Pfam F-box domain 222 259 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3803 Mtr-Chr8 48669638 48672648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3803 63 184 AGC Kinase Gene Family AT5G58140 33.871 5.53e-13 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3803 8 48669638 48672648 Mtr8g3803 8 48669638 48672648 ECH