Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3796 ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCACCACGGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAACTTAATAAGGAAGAAGATGGTGATATAAGTAATGGGTCATCATCATCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTGAAGGAAGTTTTCACCTTTTTGATTAAATTATGTGACTTTGAGGTTCTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGATATTGTGAGGGAGATTTTGAGTGCCTGGCCTGCGGTCTGTAAGTTGTGCGACTCGACAAACACCAGTCCCCTATATGCTGCTGCTGTTCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAATGCTGTTAGGTATGGCGTCGACCGTATTGTGAAAGCACTTATTGTCCGTGATCCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACGTCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAACGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTCCATAGAGAAGCCGTTCAAAACACCATTAACTCTGTCACAGTGGTTGCTGTTCTTTTTGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTCCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGTGCTTTTTTGGCGATAGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCAATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA 1617 0.4088 MESKGLRFMTHQSIFTTVGSGDLDGLKKLLEKLNKEEDGDISNGSSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVLKIRSKSDMNAFHVAAKRGHLDIVREILSAWPAVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVDRIVKALIVRDPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3796 538 Pfam Ankyrin repeats (3 copies) 67 153 IPR002110 GO:0005515
Mtr8g3796 538 Pfam Ankyrin repeats (3 copies) 163 226 IPR002110 GO:0005515
Mtr8g3796 538 ProSiteProfiles Ankyrin repeat region circular profile. 233 258 - -
Mtr8g3796 538 ProSiteProfiles Ankyrin repeat profile. 233 266 IPR002110 GO:0005515
Mtr8g3796 538 ProSiteProfiles Ankyrin repeat profile. 165 186 IPR002110 GO:0005515
Mtr8g3796 538 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 538 - -
Mtr8g3796 538 Gene3D - 161 314 IPR036770 -
Mtr8g3796 538 SUPERFAMILY Ankyrin repeat 14 296 IPR036770 -
Mtr8g3796 538 Coils Coil 329 349 - -
Mtr8g3796 538 Pfam Ankyrin repeat 234 265 IPR002110 GO:0005515
Mtr8g3796 538 Gene3D - 8 160 IPR036770 -
Mtr8g3796 538 Coils Coil 538 538 - -
Mtr8g3796 538 SMART ANK_2a 97 126 IPR002110 GO:0005515
Mtr8g3796 538 SMART ANK_2a 233 263 IPR002110 GO:0005515
Mtr8g3796 538 SMART ANK_2a 165 194 IPR002110 GO:0005515
Mtr8g3796 538 SMART ANK_2a 62 90 IPR002110 GO:0005515
Mtr8g3796 538 SMART ANK_2a 131 161 IPR002110 GO:0005515
Mtr8g3796 538 SMART ANK_2a 199 228 IPR002110 GO:0005515
Mtr8g3796 538 Pfam Domain of unknown function 349 456 IPR026961 -
Mtr8g3796 538 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 538 - -
Mtr8g3796 538 ProSiteProfiles Ankyrin repeat region circular profile. 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3796 Mtr-Chr8 48529984 48533262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3796 1 538 Miscellaneous Gene Families AT2G01680 69.202 0.0 741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3796 8 48529984 48533262 Mtr8g3796 8 48529984 48533262 ECH