Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3792 ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGTTCATCTTCAACTTCATCTTCATCACGAATAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATAGCACAACTAGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTTTGCACTTCAATCACGATGACAACTCTCACTCACTCCTCCTTCAATTAACCTCCCATGTTCCCGATGAATTGTGGTCAATGAAACTGGGTTTGAAGCTTCTTCTTGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTTTCATCTAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATCCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAAGAACAAGAAACTGGTAGCACAAAGATGTGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAGGAAGACGATCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCAGCTGGAGTTTCTTCACCAAATTTCTCCACACCTGCTCCATGGCAGGAACTTATTCTATCTCAGCTAAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCGAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAAATGCCGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTAGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAAACGGTCACTGCTGAAGGCTAA 1449 0.4155 MVIVGGGSWKTAMLMSSSLSHVRPLTCSSSTSSSSRIAPHPHDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNHDDNSHSLLLQLTSHVPDELWSMKLGLKLLLERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQETGSTKMWVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLNAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTAEG* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3792 482 Pfam Rubisco LSMT substrate-binding 337 457 IPR015353 -
Mtr8g3792 482 SMART set_7 57 293 IPR001214 GO:0005515
Mtr8g3792 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 297 476 IPR036464 -
Mtr8g3792 482 PANTHER F21J9.27 16 479 - -
Mtr8g3792 482 CDD SET_LSMT 58 301 - -
Mtr8g3792 482 ProSiteProfiles SET domain profile. 59 287 IPR001214 GO:0005515
Mtr8g3792 482 Gene3D set domain protein methyltransferase, domain 1 5 300 - -
Mtr8g3792 482 Pfam SET domain 69 287 IPR001214 GO:0005515
Mtr8g3792 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 16 479 - -
Mtr8g3792 482 Gene3D - 337 478 IPR036464 -
Mtr8g3792 482 SUPERFAMILY SET domain 39 305 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3792 Mtr-Chr8 48499084 48502731 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr8g3792 SET 3.4e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3792 8 48499084 48502731 Mtr8g3792 8 48499084 48502731 ECH