Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3780 ATGGACGACGTAAAAGACAAGATGAAAGGATTCATCAAGAAAGTTAACAACCCTTTCACTTCTTCTTCTTCTGGTAAATTCAAGGGCCAAGGTCGAGTCTTGGGTTCTTCTTCTTCTTCTTCAACACCTGCAAATTCCATTCCTACCCCTACCCATCGTCCTTCTCCTTCTCAGAACCCTAATCCCAAACCCAAACCTACTCCACCGATCGCTTCAGATCAAAGCAAAATCGATAAACCACGCAAACCCGCAGATGGGTTTGATCCATTTGATTCATTGGTTACTTCTTCTCAAAGATCTCAAAATGGGTATTCACTCAACGTATATGAATGTCCAATTTGTAAACAACCCTTTCGATCTGAAGACGAGGTTACTGAACACGTGGAATCTTGTTTGAGTAACCCAATTGAAAACGATGATGTTGATGAAAAATGTGTGTCAAAATTGAAAGAGAGTCAAGTTTCTGAGTCTAATACTGAATTGGAGATTTGTATTGGTACTTATGTTTCGGGGAATCCGTCCCAAGGTTCGGTTGATATTGTTCTTAAATTGTTGAGGAATATTGTTAAGGAACCTGATAATGTTAAGTTTAGGAAGATTAGGATGGGTAATCCAAAGATTAAAGAAGCTATTGGCGAGGTTATTGGTGGTGTCGAATTGCTGAGTTTGTTAGGATTTGAGCTTAAGGAGGAGAATGGAGAAACTTGGGCATTGATGGAGGTTCCTACTGAGGAGAAAGTAAATTTGATCAAGAAAGCAATAGTGTTGTTGGAACCACAATTGGTTCAAGATACTCCAAAGAGAGAAAATTCAACGCCTACCGTTTCCACTGAGAAAGTAGCCGAGGCCGAACCAAAAAAGATTGACAGACAGGTAAAGGTCTTCTTTGCTGTCTCTGAAAGTGTTGCAGCTAGAATTGAGCTACCAGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAGTTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTCTAATCCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCTAAGAGGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTCTGTATGAGTTTGTGAGCTCTGCTTTAAAAGAATCATGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTTCAACGGCGTGTAATCCCATGTTTCCCAAAAGCAGGGCAAAAAGCTAAAACGATAGAAGAAGAAGACCTGGTGCCTTCTGCCCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTGGAAATCAGTGAACCACTTGTAAATGGTTAA 1392 0.4016 MDDVKDKMKGFIKKVNNPFTSSSSGKFKGQGRVLGSSSSSSTPANSIPTPTHRPSPSQNPNPKPKPTPPIASDQSKIDKPRKPADGFDPFDSLVTSSQRSQNGYSLNVYECPICKQPFRSEDEVTEHVESCLSNPIENDDVDEKCVSKLKESQVSESNTELEICIGTYVSGNPSQGSVDIVLKLLRNIVKEPDNVKFRKIRMGNPKIKEAIGEVIGGVELLSLLGFELKEENGETWALMEVPTEEKVNLIKKAIVLLEPQLVQDTPKRENSTPTVSTEKVAEAEPKKIDRQVKVFFAVSESVAARIELPDSFYKRSAEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKRRYTRTIIRIQFPDGVVLQGVFAPWEPTTALYEFVSSALKESCLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3780 463 CDD PUB 174 258 - -
Mtr8g3780 463 SMART PGNneu 176 243 - -
Mtr8g3780 463 MobiDBLite consensus disorder prediction 15 48 - -
Mtr8g3780 463 Coils Coil 314 334 - -
Mtr8g3780 463 Gene3D - 346 439 - -
Mtr8g3780 463 Gene3D - 170 258 - -
Mtr8g3780 463 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 462 - -
Mtr8g3780 463 Pfam PUB domain 175 248 IPR018997 -
Mtr8g3780 463 MobiDBLite consensus disorder prediction 49 69 - -
Mtr8g3780 463 Pfam UBX domain 354 402 IPR001012 GO:0005515
Mtr8g3780 463 SUPERFAMILY Ubiquitin-like 323 436 IPR029071 -
Mtr8g3780 463 ProSiteProfiles UBX domain profile. 352 436 IPR001012 GO:0005515
Mtr8g3780 463 MobiDBLite consensus disorder prediction 1 98 - -
Mtr8g3780 463 SUPERFAMILY PUG domain-like 170 255 IPR036339 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3780 1 384 C2H2 Transcription Factor Family AT2G01650 57.320 3.58e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g3780 UBX 0.00014 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3780 8 48368557 48371639 Mtr8g3780 8 48368557 48371639 ECH