Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2705 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCAGTCAGAAGCACCCCAAGATCTAGATCCTATGACCCTTGACTTGACACTCAATTTCAGTTCGAGTGAAGCCGAGTTAATGGGTTCAAGTGATGCTAGTAGCGAAGTAGGAGCTGCTGAAGTTCATGCTTCGCCATCGGTAACTCCAAGGATATTCTCTTGTAATTACTGCAAGAGGAAGTTCTATAGCTCGCAAGCATTAGGTGGTCATCAGAACGCTCACAAAAGGGAGAGGACGATGGCTAAACGTGCAATGCGAATGGGAATGTTCACCGAAAGGTATACAAGCCTTGCTTCTCTACCTCTTCATGGTTCGCCTTTTCGGTCCCTCGGTGTTGAAGCTCATTCTGCAATGCATCAAAGACATATGCAACCATCATCATCAATGAGAGCTCCAGATATGAGAGCTGCTGCGAAATTTGATAGAAACCATTTTGGATCGCTAGTTTACGTTGAAGATGATGATGTAGGTAGCTTTTGGCCCGGAAGTTTTAGACAGGTGGATCAAGGAGGAGTTGTTAATATAGGATATCCTCAAACTTCAAATTCTAGTTTTGTTCCAATGGCACCTCCTCCACCTCAAGCATCTGCATCTCCTGATCTTACACTGAAGCTATAA 654 0.4388 MMTPNLNLEPENQSEAPQDLDPMTLDLTLNFSSSEAELMGSSDASSEVGAAEVHASPSVTPRIFSCNYCKRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRHMQPSSSMRAPDMRAAAKFDRNHFGSLVYVEDDDVGSFWPGSFRQVDQGGVVNIGYPQTSNSSFVPMAPPPPQASASPDLTLKL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2705 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Mtr8g2705 217 MobiDBLite consensus disorder prediction 195 217 - -
Mtr8g2705 217 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g2705 217 PANTHER ZINC FINGER PROTEIN 3-RELATED 15 217 - -
Mtr8g2705 217 PANTHER ZINC FINGER PROTEIN JAGGED 15 217 IPR045320 GO:0003700
Mtr8g2705 217 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Mtr8g2705 217 Gene3D Classic Zinc Finger 40 111 - -
Mtr8g2705 217 SUPERFAMILY beta-beta-alpha zinc fingers 61 92 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2705 Mtr-Chr8 37681154 37683780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2705 57 217 C2H2 Transcription Factor Family AT1G66140 46.524 2.42e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g2705 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2705 8 37681154 37683780 Mtr8g2705 8 37681154 37683780 ECH