Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1692 ATGAACGAGAAAGCCAACGTTTCTAAAGAGCTCAACGCCAAACACAAAAAGATATTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGATTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGAATTTTTATTTGCATGAGTTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTACAAATTATGACAGAGTTGGCGTTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAAGGATACTAAGCCAAAATCACCTTCTAGACTGATAGAAGAGAAAAGTCCTTCACAATGGCAAAAGCCCGTGGACAATACTTTTGAGGAAAGGAAGAAAATCCAACCGTCAAATGCAATTCCTGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAGGTAACTCCAGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTGCAAACTGAAACATCACAGACGGCTGCTACAGTTTCTAATCCCCCTCCAAAAGTTGACTTTGCGACAGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGACGCAGCTGATGCTACTGCTGACGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGCCGAGAAAACTGACCCCAGAAAATCGGTTGAGAGTACACCCCAGCCTACCTCTGGAATTGAGGATCTGTTTAACGACTCATCTTCAGTGACGCCAAGTTCTTCTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTTTTTGAAAAGAACAACAATATAGTGTCTCCATTTGCTATGCATCAACAACAGTTGGCTATGCTGGCACAGCAACAGTCTCTTCTAATGGCAGCTGCTGCCGCTGCTAAATCTGCTAGTGGGGATGTGAAATATCCTGCTAATGTACAGCAACCTGGTTCCAACATTCCTTTCCAAAGTTGGCCAGCTGCAAGCTACCCAATTCCAGGAGTAATGCCCGTGGGTGGTCAGGGAGAATTGCAGAAAATTATGCAGACAATAAACATGACATCCACTCGTCCAGCAGGGAGCTCAGTTCAGTATCCACCATCTAGTTTTTTTACAATGCCGCAAGTTGCTCCAGTTAATGGCACAACGACAGCGGTGGCAAGTAAACCTCAATCAGCAACTCCGGTATCGACAAACACTACACAAACGGCGAATGATTATGATTTTTCCTCGTTAACACAAGGAATGTTTGCGAAACCCTGA 1404 0.4323 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMSCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPTNYDRVGVENFIRAKYEDKRWVAKDTKPKSPSRLIEEKSPSQWQKPVDNTFEERKKIQPSNAIPATRISVLAPPKGHVQVTPVAKHQHIEKVEPLVPQVQTETSQTAATVSNPPPKVDFATDLFDMLSMDDPNEKGSDAADATADDDNNWAGFQSAAETSTAEKTDPRKSVESTPQPTSGIEDLFNDSSSVTPSSSLEKPQKDVKNDIMSLFEKNNNIVSPFAMHQQQLAMLAQQQSLLMAAAAAAKSASGDVKYPANVQQPGSNIPFQSWPAASYPIPGVMPVGGQGELQKIMQTINMTSTRPAGSSVQYPPSSFFTMPQVAPVNGTTTAVASKPQSATPVSTNTTQTANDYDFSSLTQGMFAKP* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1692 467 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Mtr8g1692 467 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Mtr8g1692 467 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Mtr8g1692 467 CDD ArfGap 19 117 - -
Mtr8g1692 467 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Mtr8g1692 467 PANTHER ARF GTPASE ACTIVATOR 1 466 - -
Mtr8g1692 467 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Mtr8g1692 467 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Mtr8g1692 467 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 466 IPR044520 GO:0005096
Mtr8g1692 467 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Mtr8g1692 467 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Mtr8g1692 467 MobiDBLite consensus disorder prediction 272 300 - -
Mtr8g1692 467 MobiDBLite consensus disorder prediction 434 454 - -
Mtr8g1692 467 MobiDBLite consensus disorder prediction 228 303 - -
Mtr8g1692 467 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1692 Mtr-Chr8 25000935 25008528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1692 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 1.25e-29 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1692 8 25000935 25008528 Mtr8g1692 8 25000935 25008528 ECH