Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1680 ATGACTTGTTGCTCTCAATTTTTTAGGTCTTCTTCATCCACACGATTCACCGGAACAGATATAGATATTTCAGAACTTCACAATGTCAAAATTTACACTTATAAGGAATTGCGAATTGCCACTTCAGGGTTTAGTCTTGCAAACAAGATAGGGCAAGGAGGTTTTGGATCAGTCTATAAGGGAAAGTTGAGAGATGGATGCATGGTAGCTATAAAAGTTTTATCAGCTGAATCAAAACAAGGGGTCCAAGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTTGTGAAGTTGAATGGTTGTTGTGTGGAAGACAATCATAGAATTTTGGTATATGGCTATCTTGAGAACAATAGCCTAGCACAAACACTTCTTGGTTCAGGCCATAGTAGCATTAAATTCAGTTGGCTTGTAAGGCGCAACATTTGCATAGGTGTTGCTCGAGGGCTTGCATTCCTTCATGGAGAGGTTCGACCACATATCATTCATAGAGATATAAAAGCCAGCAATATATTACTTGACATAGATCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATCCCCCCAAACCTGACTCATATTAGTACAAGGGTTGCTGGAACTGCTGGTTATGTCGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCAGACATCTATAGTTTTGGAGTGCTACTATTAGAAATTGTTAGTGGGAGGCCCAACACAAACAGACGCTTACCTGTTAAAGAACAATATCTTCTGACAAGGGCATGGGATTTGTACGAGGAAGGGGAGCTAAAAAATTTGGTGGATGTTTTTCTAGAAGGGGACTTAAATGTTGAGGAGGCAGTCAAATTTTGCAAGGTTGGTCTTCTTTGCACGCAGGACTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTAAAATGCTTATTGGTGAAAAAGATGTGAACGATGATAATATGATAAAACCAGGCATGATATTTGAATTTGTAGATGCCAATGACCTAGGGAACAAAAGAGGTAAGGCTGAAATGGAAAGTACATGTACTTCTTTGTTGGCAGGTTCAGGGAATCAAGATGATTCATCTTCATCAGGAACTGGGACCTCTTTTGCTACCATGACGTTCACAGCTATTTATGATCGAACCAATTAA 1170 0.3991 MTCCSQFFRSSSSTRFTGTDIDISELHNVKIYTYKELRIATSGFSLANKIGQGGFGSVYKGKLRDGCMVAIKVLSAESKQGVQEFLTEIKVISSIEHENLVKLNGCCVEDNHRILVYGYLENNSLAQTLLGSGHSSIKFSWLVRRNICIGVARGLAFLHGEVRPHIIHRDIKASNILLDIDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVKEQYLLTRAWDLYEEGELKNLVDVFLEGDLNVEEAVKFCKVGLLCTQDSPQLRPSMSTVLKMLIGEKDVNDDNMIKPGMIFEFVDANDLGNKRGKAEMESTCTSLLAGSGNQDDSSSSGTGTSFATMTFTAIYDRTN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1680 389 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1680 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Mtr8g1680 389 Pfam Protein kinase domain 46 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1680 389 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Mtr8g1680 389 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Mtr8g1680 389 CDD STKc_IRAK 50 315 - -
Mtr8g1680 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 375 - -
Mtr8g1680 389 SUPERFAMILY Protein kinase-like (PK-like) 21 315 IPR011009 -
Mtr8g1680 389 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
Mtr8g1680 389 ProSiteProfiles Protein kinase domain profile. 44 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1680 389 PANTHER RECEPTOR-LIKE KINASE 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1680 Mtr-Chr8 24841011 24846343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1680 32 332 Receptor kinase-like Gene Family AT1G56120 54.485 7.18e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1680 Pkinase 1.7e-47 CL0016