Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1661 ATGGAAGCTAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAAAAGATGAGAAGGAACAACATGGTGGAAGAAGAAATGGAAAATGAAGTAGAAGAGGAGGAGGGTGATGTTAGTCTGACTGAAGAAGAGAAGAAGAAAGGGGTCGGTGGCGGGAGAAGAGGAGGTGGCGGCGGTGTTTCTCCACCCTGTTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATATCATCGCCGCCATAAAGTGTGCGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGTCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAGTCTAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAACGGCGCCGGAAAACCAACCCGGAAACTGCCAATGAGGGAAGCAGTCACAGCAAAGGACAACATCAACCTAAGGAAACTCAATGCAGGATTCAGATGAACTTACCAGGCAGTTCTGGCTATAAGTCCTTCAACATTAGATGA 543 0.4807 MEARSIERKRTLMMEKMRRNNMVEEEMENEVEEEEGDVSLTEEEKKKGVGGGRRGGGGGVSPPCCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPETANEGSSHSKGQHQPKETQCRIQMNLPGSSGYKSFNIR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1661 180 MobiDBLite consensus disorder prediction 129 180 - -
Mtr8g1661 180 MobiDBLite consensus disorder prediction 158 180 - -
Mtr8g1661 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 156 - -
Mtr8g1661 180 Coils Coil 13 44 - -
Mtr8g1661 180 MobiDBLite consensus disorder prediction 1 25 - -
Mtr8g1661 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 156 IPR044817 GO:0003677
Mtr8g1661 180 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Mtr8g1661 180 Pfam SBP domain 65 138 IPR004333 GO:0003677
Mtr8g1661 180 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Mtr8g1661 180 SUPERFAMILY SBT domain 62 143 IPR036893 GO:0003677|GO:0005634
Mtr8g1661 180 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1661 Mtr-Chr8 24466620 24468362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1661 1 180 SBP-box Gene Family AT3G15270 48.913 2.78e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g1661 SBP 2.7e-31 No_clan