Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4301 ATGGATTTGGACGAACCCTCGTTACCTTCTAACCCTAATATCAATGACGGAATCGGTAATGAAACACCGCCGTCATCCGCCGTGAATGATGGCGAAGACGTGAAACCAGCGGGAAGGTTACAACGGTGGACGAGGCAGGAGATTCTGGTGCTAGTACATGGAAAGAACGATGCTGAAAGCCGGTTGAAACCGGGTCGAAACGGTTCGTTGTTTGGTTCGTTTGAGAAGAAGTGGACGTTGGTCTCTTCGTACTGTGAGAAGCATGGTGTGAACCGGACACCGATTCAGTGTAAGAAGCGATGGGGCAATCTCACCGCAGATTATAAGAAGATTAAGGAGTGGGAGTCTCAGGTGAGTGATGAAACTGAGTCGTTTTGGTTGATGAACGTTGAGTTGAGGAGAGAGAGGAAATTGCCTGGTTGTTTTGATATAGAGGTTTACAATATTCTTGATTCGGCGGTGGCTGCAAATGCTGTTCCCGTGGCTGTGGCCGCACCGGTTTCAGAGGTGGTTGGTGATGAGGAGGTTTATATTTATGATAGTAACAGGAAAGTGAGTGGTGAAGATGAGTTGTTTTCTGATTTGGAGAAGGATGATAATGTTCTTTCACCTGTTCCAATATCAGTATCAGTATCAGAGAAGCAGTTTATTCCACTCCTCAGTGGCTTACAAGGAGAAGGCAATGCCATCAATGAGAAACAACCAGGTGAACGAAAGAGGAAGCGGGGGGTTGCAACTGAAGGCAATATTGAAGAGGAAGAGGAGGAAAGTGTGCAAAGTGAATTAATTAAAGTGTTAGAGAAAAATGGCAAGATGCTATGTGAACAGCTAGAGGCTCGGAACAAGAGTTTACAGTTGGATCGCCAGCAACAGAATCAAACTGCAACTAAAATGGTTGCTGTGCTTGATAAGCTTGCAAATGCTCTTGGGAGAATTGCTGATAAATTGTAA 951 0.4511 MDLDEPSLPSNPNINDGIGNETPPSSAVNDGEDVKPAGRLQRWTRQEILVLVHGKNDAESRLKPGRNGSLFGSFEKKWTLVSSYCEKHGVNRTPIQCKKRWGNLTADYKKIKEWESQVSDETESFWLMNVELRRERKLPGCFDIEVYNILDSAVAANAVPVAVAAPVSEVVGDEEVYIYDSNRKVSGEDELFSDLEKDDNVLSPVPISVSVSEKQFIPLLSGLQGEGNAINEKQPGERKRKRGVATEGNIEEEEEESVQSELIKVLEKNGKMLCEQLEARNKSLQLDRQQQNQTATKMVAVLDKLANALGRIADKL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4301 316 Coils Coil 274 294 - -
Mtr1g4301 316 ProSiteProfiles Myb-like domain profile. 35 105 IPR001005 -
Mtr1g4301 316 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 316 - -
Mtr1g4301 316 MobiDBLite consensus disorder prediction 227 255 - -
Mtr1g4301 316 MobiDBLite consensus disorder prediction 232 248 - -
Mtr1g4301 316 Gene3D - 43 110 - -
Mtr1g4301 316 MobiDBLite consensus disorder prediction 1 33 - -
Mtr1g4301 316 Pfam Myb/SANT-like DNA-binding domain 41 126 IPR044822 -
Mtr1g4301 316 SUPERFAMILY Homeodomain-like 43 110 IPR009057 -
Mtr1g4301 316 MobiDBLite consensus disorder prediction 8 27 - -
Mtr1g4301 316 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4301 Mtr-Chr1 54703627 54704583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4301 42 113 Trihelix Transcription Factor Family AT1G33240 31.944 7.37e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g4301 Myb_DNA-bind_4 6.7e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4301 1 54703627 54704583 Mtr1g4301 1 54703627 54704583 ECH