Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1047 ATGATGAAGACTCCAAATTTGAACTTGGAAGCTGAAAATAGTTTAGAAGTAAGCAGCCAAGTAGGTTCCAACATATACTTACAAGAATCATCTCATGATCTTACCAAAGACAGTGCCACAACTTCTTCTTGTCTTACTAAGCCAGACATTAATCCAGGTTCTATTTCCCTTGACCTGACTCTCAACTTCGATCCGAGCGACGAAGATTTGAAGGAAACAAGCGACACTAACAGTGAAGTACTAGGAGCTGATCAAGCTCATAATACTGTTTCCGCACCAACGATTCATAGAGTTTTCTCTTGTAATTATTGTAGGAGGAAATTCTTTAGCTCGCAAGCATTAGGTGGACATCAGAATGCTCATAAAAGGGAGAGAACATTGGCGAAGCGCGCTATGCGAGTAGGGATGTTTACCGAAAGGTATACAAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATCCTCTTGGTATTCAAGCTCATGCTGCAATGCACCAAAACCATATGCCATCATCGTCGTCGATGCTGATGAGGGCTCATGATATGAGACCTACAGCGAAATTCGAGAAAGATTGTTTTGGAGCAGCACCGATGTTTATGCATAATGACGATGTTGGCATATTTTGGCCTGGAAGTTTCAGGCAGATAAATCAAAGTGTTCATAATTCAAATTTGAATACTAGTTTTGTAGCAACTGAACCTCCTCAACAAACATCTACTACATCTCCTGATCTTACTTTGAGGCTTTAA 756 0.4034 MMKTPNLNLEAENSLEVSSQVGSNIYLQESSHDLTKDSATTSSCLTKPDINPGSISLDLTLNFDPSDEDLKETSDTNSEVLGADQAHNTVSAPTIHRVFSCNYCRRKFFSSQALGGHQNAHKRERTLAKRAMRVGMFTERYTSLASLPLHGSSSFHPLGIQAHAAMHQNHMPSSSSMLMRAHDMRPTAKFEKDCFGAAPMFMHNDDVGIFWPGSFRQINQSVHNSNLNTSFVATEPPQQTSTTSPDLTLRL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1047 251 PANTHER ZINC FINGER PROTEIN JAGGED 8 251 IPR045320 GO:0003700
Mtr1g1047 251 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Mtr1g1047 251 MobiDBLite consensus disorder prediction 229 251 - -
Mtr1g1047 251 SUPERFAMILY beta-beta-alpha zinc fingers 97 126 IPR036236 -
Mtr1g1047 251 Gene3D Classic Zinc Finger 74 146 - -
Mtr1g1047 251 PANTHER ZINC FINGER PROTEIN 3-RELATED 8 251 - -
Mtr1g1047 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Mtr1g1047 251 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1047 Mtr-Chr1 11966091 11969336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1047 97 251 C2H2 Transcription Factor Family AT1G66140 43.956 3.19e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1047 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1047 1 11966091 11969336 Mtr1g1047 1 11966091 11969336 ECH