Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1039 ATGGGTTTCAGAGTTTCCTACGTTCTTCACCTTGTTGTGTTGTTTTCTATGATGTTTGTTTCTGCATGGTCTCAAGATGATGTTGTTATGCAAAAGCTGAAAAGTTCTATAAAATCATCAAGCAATGATCTTGATTGGTCAGACTCAGATTTTCGCAAATGGAATCGTGTTCAGATTAATGGAAACACAGTCACTGCAATTCAAATTGCAGGTCTGAATATTCAAGGTTCTTTACCAAAAGAATTGGTGCAACTCACTCAGTTAAATCGTTTTGAGTGCAATGGAAACGCTTTATCTGGTGATTTTCCTTACATGCCAAGTTCACTTCAGTTTTTGTATATTAACAACAACAATTTCACTTCCATGCCAAGTGATTTCTTCACAAACATGAGTAATTTGATAGAGGTGAGTATTGGTTATAACCCTTTTCCTCAGTGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTAAAGTTTTTTCTGCTATGAATGCTAGTTTAGTTGGTGTAATCCCTGAATTCTTTGGAAAAGAAACTTTTCCAGGTTTGACTAATTTGTATCTGTCTTTCAATTTTCTTGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATAGAGAAACTTTGGGTAAATGGTCAAAGTAGTATTAATAGACTCAATGGCACACTTTCTGTTTTGCAAAATTTGACATCATTGAAACAAATTTGGGTACATGGTAATTCGTTTACTGGTCGTATACCTGATTTATCAAATCATGATCAATTGTTTGATGTTAGTTTGAGAGATAATCAGTTAACCGGTGTTGTTCCACCGTCTTTAACTTCGCTTCAAAGTTTAACAGTTGTTAATTTGACAAACAATTATCTTCAAGGGTCACTTCCTAAGTTTCAAAATCGTGTTCGTGTTGATAATGATATTGATAGAGGGACTCATAGCTTTTGCACTAAGGCTATTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATGACCCTTGTCAAGGTGGTTGGTTGGGGGTTGTTTGTTCTAGTGGCAACATTACCATTATCGACTTTCAAAACAAGGGTTTTACTGGCAGTATTTCTCCTAATTTTGCAAGTCTTAGTTCTTTGACGAAGTTGCTTCTTGCTAACAATAATCTCACCGGTACTCTACCTAAGGAGCTTGCTAGTATGCCTCAATTGAAAGAGCTAGATGTTTCGAATAATTTGTTGTATGGTCATATACCGTCGTTTCGCGGCGATGTGGTTGTTAAAACAGGTGGAAATCCTGATATTGGAAAGGATAAACCTCATGACTCGCCTGACAGCCCCAAATCTAGTTCCGACTCTAGTTCTGGAGGTGAAGATAAGAAGAAATTGAGTGTTGGAGCAATTGTTGGGATTGTGATAGGAATTTTATGCTTAATTGGTACACTGGTTGTGGTATTTGTTATGTGCCATAGAAGACAAAATAAGCGTGATGACAAAATTGAAACTCCGAATGCGATCGTGGTACATCCTCGTCACTCTGGAGATGGAAATGGCGTGAAAATAAGTGTTGCAGCATCTGGAAGTTCTGGTGCCGGCGTTTCAGGAGGAACTGCTGGATTTAGTCAATCGAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTTTAAGAGAAGTTACAGGCAATTTTAGCGAAAAAAACATATTGGGGAGAGGCGGTTTCGCTACTGTATACAAAGGAGAATTGGACGATGGAACAACGATTGCAGTGAAAAGGATGAAATCTGAAATGGTTGGTGATGAAGGGTTGAATGAGATCAAGTCCGAAATCGCGGTTCTCACTAAGGTTCGACACAGGCATTTGGTTGCACTCCATGGCTATTGCTTGGACGACAATGAGAAACTTCTTGTTTTTGAATACATGCCTCAGGGAACTCTTAGTCAACATCTCTTTGAGTGGAAAGACGACGGGTTGAAACCGCTCGGATGGAAGAGTAGGCTTTCCATTGCCTTGGATGTTGCCCGAGGTGTTGAATATCTCCATGGTCTGGCACAACAAATTTTCATTCATAGAGATCTGAAACCAACAAATATTTTGCTTGGAGATGATATGCGCGCTAAAGTTGCCGACTTTGGATTAGTTCGGCTAGCTCCAGAAGGAAAAGCTTCATTAATCCAGACTAGATTTGCAGGAACTTTTGGATATATGGCACCAGAGTATGCAGTCACCGGCCGAGTCACCACAAAGTTAGACGTGTACAGCTATGGCGTGATTCTTATGGAGATGATAACCGGAAAGAGAGTAATCGACAACAACCAACCAGACGAGAACATCCACCTTGTTACTTGGTTCCGCAGAATTATACTTAACAAAGGCTCGTACGAAAAGGTCATTGATCCAGCAATGGACATCAACGAGGAAGGCTTGGAGAGTTTCAGGATCATTTCAGAATTGGCAAGCCACTGCTGTGCAAGGGAGCCTCATCAGCGTCCCGATATGGGATACGTAGTGAATGTGTTAGCACCTCTTGTTGAGATTTGGAAGCCGGCTGAACCTAATGCTGATGACATGTATGGGATTGACTTGTATATGGGTTTGCCTCAAGCACCGAGTAAGTTGCAGAATCTTGAAGGAATGAGCAACACACTCGATGTTTCGTATTGTTCGTCGAAGGCTGCTAGTTCTGAGAATACGCAGTCGAGTATACCACCCCAGTCTCCTGGATTTGTTGATTCCTTTACATCTTCTGATGCACGATGA 2811 0.4013 MGFRVSYVLHLVVLFSMMFVSAWSQDDVVMQKLKSSIKSSSNDLDWSDSDFRKWNRVQINGNTVTAIQIAGLNIQGSLPKELVQLTQLNRFECNGNALSGDFPYMPSSLQFLYINNNNFTSMPSDFFTNMSNLIEVSIGYNPFPQWQIPSSLKNCLALKVFSAMNASLVGVIPEFFGKETFPGLTNLYLSFNFLEGNLPNSLSGSSIEKLWVNGQSSINRLNGTLSVLQNLTSLKQIWVHGNSFTGRIPDLSNHDQLFDVSLRDNQLTGVVPPSLTSLQSLTVVNLTNNYLQGSLPKFQNRVRVDNDIDRGTHSFCTKAIGQPCSPLVNALLSVVEPFGYPLKLAQSWQGNDPCQGGWLGVVCSSGNITIIDFQNKGFTGSISPNFASLSSLTKLLLANNNLTGTLPKELASMPQLKELDVSNNLLYGHIPSFRGDVVVKTGGNPDIGKDKPHDSPDSPKSSSDSSSGGEDKKKLSVGAIVGIVIGILCLIGTLVVVFVMCHRRQNKRDDKIETPNAIVVHPRHSGDGNGVKISVAASGSSGAGVSGGTAGFSQSSSVQNVEAGNMVISIQVLREVTGNFSEKNILGRGGFATVYKGELDDGTTIAVKRMKSEMVGDEGLNEIKSEIAVLTKVRHRHLVALHGYCLDDNEKLLVFEYMPQGTLSQHLFEWKDDGLKPLGWKSRLSIALDVARGVEYLHGLAQQIFIHRDLKPTNILLGDDMRAKVADFGLVRLAPEGKASLIQTRFAGTFGYMAPEYAVTGRVTTKLDVYSYGVILMEMITGKRVIDNNQPDENIHLVTWFRRIILNKGSYEKVIDPAMDINEEGLESFRIISELASHCCAREPHQRPDMGYVVNVLAPLVEIWKPAEPNADDMYGIDLYMGLPQAPSKLQNLEGMSNTLDVSYCSSKAASSENTQSSIPPQSPGFVDSFTSSDAR* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1039 936 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524
Mtr1g1039 936 Gene3D Ribonuclease Inhibitor 327 451 IPR032675 -
Mtr1g1039 936 Pfam Leucine Rich repeats (2 copies) 391 429 IPR025875 -
Mtr1g1039 936 SUPERFAMILY L domain-like 44 433 - -
Mtr1g1039 936 SUPERFAMILY Protein kinase-like (PK-like) 557 857 IPR011009 -
Mtr1g1039 936 CDD STKc_IRAK 586 860 - -
Mtr1g1039 936 MobiDBLite consensus disorder prediction 911 936 - -
Mtr1g1039 936 PANTHER OSJNBA0070M12.3 PROTEIN 1 936 - -
Mtr1g1039 936 Gene3D Phosphorylase Kinase; domain 1 547 657 - -
Mtr1g1039 936 ProSiteProfiles Protein kinase domain profile. 580 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1039 936 Pfam Protein kinase domain 581 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1039 936 MobiDBLite consensus disorder prediction 441 472 - -
Mtr1g1039 936 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 936 - -
Mtr1g1039 936 Gene3D Transferase(Phosphotransferase) domain 1 658 872 - -
Mtr1g1039 936 SMART serkin_6 580 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1039 936 Gene3D Ribonuclease Inhibitor 24 322 IPR032675 -
Mtr1g1039 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Mtr1g1039 936 SMART LRR_typ_2 278 300 IPR003591 -
Mtr1g1039 936 SMART LRR_typ_2 413 435 IPR003591 -
Mtr1g1039 936 SMART LRR_typ_2 107 129 IPR003591 -
Mtr1g1039 936 SMART LRR_typ_2 389 412 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1039 Mtr-Chr1 11831933 11835893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1039 58 863 Receptor kinase-like Gene Family AT5G07280 31.573 4.19e-81 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Mtr1g1039 Pkinase 9.6e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1039 1 11831933 11835893 Mtr1g1039 1 11831933 11835893 ECH