Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1028 ATGGTTTCAAGATCTTATTCAAACCTAGTAGAGTTAGCTTCTGGTGAAACTCCATCATTTGGTTTAATGAATAGAAGAATTCCAAGGATTATGACTGTGGCTGGTTTGATATCTGAAGTTAATATTGATGATGATCAAGTAGAGAGTGTTGCCTCTGATCTATCTTCATCTTCGGTACATCGCGACCGGATCATAATAGTGGCTAATCAGCTTCCTATAAAAGCTCAAAAGAATCATGATGGTAATAGGAGTTATTGGTCTTTTGATTGGGATGAGAATTCACTTCTTCAATTGAAAGATGGAATAGGTGATGATGATATTGAGGTTATTTATGTTGGTTGCTTAAAGGAAGATGTTCATCCTAATGAACAAGATGAGGTTTCAATGACACTTCTTGAGAATTTCAAATGTGTCCCTACTTTTCTTCCACCTGAAATGTTTACCAAGTACTATCATGGTTTTTGCAAACAGCAATTGTGGCCACTTTTTCATTACATGTTGCCTTTGTCACCGGAACTTGGTGGTAGGTTTAATAGGTCTTTGTGGCAAGCTTATGTATCTGTTAATAAGATTTTTGCTGATAGGATTATGGAAGTTATTAACCCTGAAGATGATTATGTTTGGATACATGATTATCATCTTATGGTGTTACCAACTTTCTTGAGAAAGAGGTTTAATAGGGTGAAACTTGGATTTTTCCTTCATAGTCCATTCCCTTCATCAGAAATTTACAAAACATTGCCTATTAGGGAAGAGTTGTTGAGAGCTTTACTTAATTCTGATTTGATTGGGTTCCATACTTTTGATTACGCGCGGCATTTCCTCTCGTGTTGCAGTCGGATGCTAGGTCTTACCTATGAATCAAAGCGAGGATATATCGGGATTGAGTATTATGGTAGGACTGTTAATATCAAGATTCTTCCTGTTGGTATACATATGGGTCAGATTCAGTCAGTTTTAAGGCTGCAAGAAACTGAGGAGAAAGTATGTGAGCTCATTCAACAGTTTTCTGATCAAGGTAGAACAATGTTGCTTGGTGTGGATGATATGGATATCTTTAAGGGAATAAGTTTGAAGCTTTTGGCCATGGAGCAGCTTCTTGTTCAGCATCCCCGGTATCGAGGAAAAGTGGTATTAGTTCAGATCGCGAATCCTGCTAGGGGACGAGGGAAAGACGTGAAAGAAATGCAAGAGGAGACAAAGGCCACGGTGAAACGGATCAATGAAAGGTTCGGGAAACCAGGGTATGATCCTGTTATTCTGATTGAGGAGCCACTGAGGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCCGAGTGTTGTTTAGTCACCGCGGTAAGGGATGGAATGAATCTCATACCGTACGAATATATAGTCAGTCGTCAAGGAAATGAAACGTTGGATAAAGTTTTGAAAATAGGATCTTCCCCTAAGAAGAAAAGCATGTTAGTTGTGTCCGAGTTCATTGGTTGTTCGCCATCTTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATTGATGCTGTGGCTGATGCAATGGATTCTGCGTTAGGAATGGCCGATTCGGAAAAAGAGCTACGACATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGTAGCTTCTTGCAGGATTTGGAAAGGGCTTGTTGTGATCACGTACGACGAAGGTGGTGGGGAATTGGATTTGGATTAAGTTTTAAAGTTGTAGCACTCGATCCAAACTTCAGGAAGCTTTCAGTGGATCACATAGTTTCAGCTTACAGGCGGACCACATGTAGGGCAATCCTTCTAGACTATGATGGTACACTAATGCCTCAGGTTTCCATTGATAAGAGTCCGACAGGTAAATCCATTGATATTCTTAATAGCTTGTGTAGAGACAAGAACAATATGGTGTTTCTTGTTAGTGCGCGAAGCCGAGCGACACTTTCGGAATGGTTTTCGCCTTGCGAAAATATGGGGCTTGCGGCCGAGCATGGTTACTTTCTGAGAATGAAGCGAGACGGTGAATGGGAAACCTGTGTTCCTGCAACAGATTGTAGTTGGAAACAAATTGCAGAGCCTGTGATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACTGCACTTGTTTGGTGCTATGAAGATGCAGATCCAGATTTTGGATCATGCCAAGCTAAGGAACTACTCGATCATCTTGAAAGCGTGCTGGCAAATGAACCAGTGACTGTCAAAAGTGGCCAGAATTATGTAGAGGTTAAACCGCAGGGTGTGAGCAAGGGATTAGTGGCGAAACGCTTACTTTCATCCATGCAAGAAAAGGAGATGTCACCTGATTTTGTTTTGTGCATAGGAGATGACAGATCTGACGAAGATATGTTTGAGGTAATCACGAGTTCAATGAACGGTCCAATAGCACCGAAAGCTGAAGTATTTGCTTGTACCGTTTGTCGGAAACCAAGTAAGGCTAAGTATTATCTAGATGATACTGCTGAAATTGTGAGATTGATTCAGGGTTTAGCCTGTGTTTCAGACCAAAAAATATTATTCTAA 2568 0.4046 MVSRSYSNLVELASGETPSFGLMNRRIPRIMTVAGLISEVNIDDDQVESVASDLSSSSVHRDRIIIVANQLPIKAQKNHDGNRSYWSFDWDENSLLQLKDGIGDDDIEVIYVGCLKEDVHPNEQDEVSMTLLENFKCVPTFLPPEMFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVNIKILPVGIHMGQIQSVLRLQETEEKVCELIQQFSDQGRTMLLGVDDMDIFKGISLKLLAMEQLLVQHPRYRGKVVLVQIANPARGRGKDVKEMQEETKATVKRINERFGKPGYDPVILIEEPLRFYERVAYYVVAECCLVTAVRDGMNLIPYEYIVSRQGNETLDKVLKIGSSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALGMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERACCDHVRRRWWGIGFGLSFKVVALDPNFRKLSVDHIVSAYRRTTCRAILLDYDGTLMPQVSIDKSPTGKSIDILNSLCRDKNNMVFLVSARSRATLSEWFSPCENMGLAAEHGYFLRMKRDGEWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNYVEVKPQGVSKGLVAKRLLSSMQEKEMSPDFVLCIGDDRSDEDMFEVITSSMNGPIAPKAEVFACTVCRKPSKAKYYLDDTAEIVRLIQGLACVSDQKILF* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1028 855 TIGRFAM T6PP: trehalose-phosphatase 599 845 IPR003337 GO:0003824|GO:0005992
Mtr1g1028 855 Gene3D - 728 853 IPR023214 -
Mtr1g1028 855 Gene3D - 598 727 IPR023214 -
Mtr1g1028 855 CDD GT20_TPS 63 552 IPR001830 GO:0003824|GO:0005992
Mtr1g1028 855 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 852 - -
Mtr1g1028 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 555 - -
Mtr1g1028 855 Gene3D Glycogen Phosphorylase B; 55 317 - -
Mtr1g1028 855 SUPERFAMILY HAD-like 599 846 IPR036412 -
Mtr1g1028 855 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 601 802 IPR006379 -
Mtr1g1028 855 CDD HAD_TPP 600 840 - -
Mtr1g1028 855 Gene3D Glycogen Phosphorylase B; 318 536 - -
Mtr1g1028 855 Pfam Glycosyltransferase family 20 63 552 IPR001830 GO:0003824|GO:0005992
Mtr1g1028 855 Pfam Trehalose-phosphatase 602 835 IPR003337 GO:0003824|GO:0005992
Mtr1g1028 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1028 Mtr-Chr1 11685277 11689536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1028 1 851 Trehalose Biosynthesis Gene Families AT1G68020 80.116 0.0 1436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1028 1 11685277 11689536 Mtr1g1028 1 11685277 11689536 ECH