LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1023	ATGTGTAAGACAATTCAAATACATGGATTCCCATCTAATGTTTCTGCTGAAGAGGTAATGAAATTTTTGGAGCAACATGCTGGATTCCAAACTGTTCTAGCTGTAGAGATTAAGCATCATAAAGATGGAGATTCTATGACACATGTTAATGTTCAATTCACAGACAAAAAAAGTGTTGAAACAATCTTAAACTTAGTTGCTAAACACCTATCTTACAGTGGAAATGTTCTAAATGCTACATTAATAAAACCTGACATTTTGTCAAAGCCAAGGATCTTTGCTTACAACGTGGATGGCGTTGGAATACACTTTGGATGTCAAACATCCAAGAGAAAACTTAGTGTACTTTGGGAACATTCAAATGCTTCTGTTAAATTCGGAGCCAGATTAAGAAAAATGTATATATTTTTCTGCTATTTGTCTAAGGATTATAAGATGCAGATCAATTCCGAGAGCATATCGCGAATTGAGATGCATCGCTCACATTGTCGTACCAAGAAACTTCTCCTTTTTCAGTTACGCAGTGCTCCTCGGATCTACGAAAAAGATGTTTCTGAAATCAAGTACTTTAAGGAAGCTTATGACAACCATTGGTTTAGAAGTGTTGATTTCACCCCATCATGCTGCATTGGCCAATCATCATCTTTATGTTTTGAGCTTCCACAAAATACCGAGGTTCCGAATTTTTGTCAGTATTATAGAAATTTTTATAAAGTTGATAACACCTTTGATCTTGAGAAACAACTTGGTTTCTCATCAAATTTGAATTTTGTCCCCATGGTGATTCCGCCAGAAGGATTCAACTTGCCATACAAAATTCTGTTCAAAATCAACTCACTAGTTCAACATAGTTGCCTTCCTTTGCAAGCAATTGACACTAATCTTTTTCATATGGTTGATCCACAAAGAATAAAATTTGAATATGTAGAAAGTGCTTTGAATAAGTTATATCAGATGAAAGAATGTTGCTATGATCCTGTTCAATGGTTGGAGAAACAATATCAAAGATACTCAACAAATAGTTCAATTCCTATATCTAGTTCCATTTCTTTAGATGATGGATTGGTGTATGTTCATAGAGTAAAAGTAACTCCCTCCAAAATATATTTCTGTGGTCCTGAAGTGAATCTTTCGAATCGAGTTTTGCGCAACTATCCTGAAGACACCGATAACTTCCTCCGCGTTTCTTTTGTTGATGAGAACATGGATAAACTCCGTTCATCTGATTTGTTGTCAGGTTCCTCTCGTATAGATGTGGACGGAGAATCAAAGGTTCATCAAAGGGTACTGTCTACACTAACGAACGGCATAGAAATCGGTGACAAGAAGTTCGAGTTTCTTGCTTTCTCGTCAAGTCAATTGCGCGATAACTCAGCGTGGATGTTTGCACCGAGAACTGGACTAACTACGGGTGATATAAGAAAATGGATGGGAGATTTTCATGAAATCAAGAACGTGGCAAAATACGCGGCAAGGCTTGGTCAATCATTCAGTTCTTCAAGGGAAACAGTGAGTGTTGGAAGACACGAAATCGAAATCATTCCTGATATAGAATTGAAACGAGGCAAAATCAAATACTGTTTCTCTGATGGAATAGGGAAAATATCGTATGAATTGGCTCAAGAAGTTGCTGAAAAATGTGGTTGCAAGGATCATATAATTCCATCTGCATTTCAAATCAGATATGGTGGATACAAAGGTGTTGTTGCTGTTGATCCTAACTCATCAACTAAACTTTCCTTGAGAAATAGCATGTGCAAGTTTAAGTCAGAAAACACGAAACTAGATGTATTGTCATGGAGCAAAAACAAACCGTGCTTTCTTAACCGTCAAGTAATTGTTCTGTTGTCCACACTCGGTGTCAAGGATCGAATCTTTAAAAGGAAGCAAAGGGAGATTGTTAATAAACTCAAAATGATATCAAGAAAACCATTCAATGCACTAGACATGATGTCACAAGGAACAATTACAGACATGTTAAGGGAAATGATTATTTGTGGATTCAATCCGACAAATGAACCTTTTCTTTCCATGATGTTGAGAACAATATGTGCAACAAAGTTACAAGAGTTGCAGCTCAAAACTAGGATTTTTGTTCGGAAAGGAAGATCAATGTTAGGATGCTTGGATGAAACAAGGACATTAAAATATGGTGAGGTATTTGTGCAGATATCTCTTCCAAGAAAAAATGTTATGTCCTCAATTTCTTCTAAGGACATTGGAGCAAAAAAAGGAAAATATATTGTTAAGGGGAAGGTAGTTGTAGCCAAGAATCCATGTCTTCATCCAGGAGATGTAAGGATTTTGAGAGCGATCGATGTACCCTCCTTACATCATATGGTAGATTGTGTTGTTTTCCCACAGAAGGGGAGAAGACCACATCCTAATGAATGTTCAGGAAGTGATTTGGATGGAGATATCTACTTTGTCTGTTGGGACCCTGCCCTTATTCCTCCTCATCAGGAAAATCCAATGGATCATTCACCACCTAAAGTCATGCATGTTGATCATGATGTCACATTACAGGATGTAGAGGAGCATTTCACTCACTACATTGTCAAAGACACCTTAGGAGTTATTGCAACTGCACACACTGTGTTTGCTGATAAGGAACCTGAAAAGGCAATGAGCCATTCATGCATAGAGCTTGCGAAACTACACTCGATCGCCGTCGATTTTGCAAAATCCGGCGTGCCGGCTGAAGTACCACAACATCTGCATGTAAAACAGTATCCAGATTTCATGGAAAAGCAAGACAAACCAACTTATCAATCAAACAGCATAATCGGAAAGCTTTACCGCGAGGTGAAGAATGTTGCACAACAAAAAAGCCTAAAAAAATCATTCACTAAAAAAGCTGCAAACAAGTTCTATGATCATGACATGAAAATTGATGGTTTTGAGAAATACACAAAAATTGCTTGTGAATACAAACAAATGTATGATACCAAGTTGATGAATTTAATGGATTACTATGGTATAGAAACAGAAGCAGAAATAATTAGTGGCAATATTTTGAAGATGTCAAAATCTTTCAATGATAGAAAGGATAAAGAAGGAATAAATCATGCAGTGATGTCACTAAGGAATGAAGCTAGAAGTTGGTTTAGTGAGATGATAAGAAAATCAAATTCTCAAGGTGGTGGTGGTGATGATGATTCTTATGCTATTGCTTCTGCTTGGTATCATGTAACATATCATCCTAGTTATTGGGGATGCTACAATGAGGGACTAAATAAGGATCATTTCCTAAGTTTTCCATGGTGTGTTCATGATACTCTTATTCAGATAAAGAAGGATAAAACCAATAGTAGAATCTATGGAATGAAAGTTTGGAGAATGCTGAAAATGTTTTTCATCACATTAATGTTTTGCATTTTATTGTGGATAGTAGTGCATTATCATATGAATTTGTATAGCTAA	3423	0.3655	MCKTIQIHGFPSNVSAEEVMKFLEQHAGFQTVLAVEIKHHKDGDSMTHVNVQFTDKKSVETILNLVAKHLSYSGNVLNATLIKPDILSKPRIFAYNVDGVGIHFGCQTSKRKLSVLWEHSNASVKFGARLRKMYIFFCYLSKDYKMQINSESISRIEMHRSHCRTKKLLLFQLRSAPRIYEKDVSEIKYFKEAYDNHWFRSVDFTPSCCIGQSSSLCFELPQNTEVPNFCQYYRNFYKVDNTFDLEKQLGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHSCLPLQAIDTNLFHMVDPQRIKFEYVESALNKLYQMKECCYDPVQWLEKQYQRYSTNSSIPISSSISLDDGLVYVHRVKVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDENMDKLRSSDLLSGSSRIDVDGESKVHQRVLSTLTNGIEIGDKKFEFLAFSSSQLRDNSAWMFAPRTGLTTGDIRKWMGDFHEIKNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDIELKRGKIKYCFSDGIGKISYELAQEVAEKCGCKDHIIPSAFQIRYGGYKGVVAVDPNSSTKLSLRNSMCKFKSENTKLDVLSWSKNKPCFLNRQVIVLLSTLGVKDRIFKRKQREIVNKLKMISRKPFNALDMMSQGTITDMLREMIICGFNPTNEPFLSMMLRTICATKLQELQLKTRIFVRKGRSMLGCLDETRTLKYGEVFVQISLPRKNVMSSISSKDIGAKKGKYIVKGKVVVAKNPCLHPGDVRILRAIDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPALIPPHQENPMDHSPPKVMHVDHDVTLQDVEEHFTHYIVKDTLGVIATAHTVFADKEPEKAMSHSCIELAKLHSIAVDFAKSGVPAEVPQHLHVKQYPDFMEKQDKPTYQSNSIIGKLYREVKNVAQQKSLKKSFTKKAANKFYDHDMKIDGFEKYTKIACEYKQMYDTKLMNLMDYYGIETEAEIISGNILKMSKSFNDRKDKEGINHAVMSLRNEARSWFSEMIRKSNSQGGGGDDDSYAIASAWYHVTYHPSYWGCYNEGLNKDHFLSFPWCVHDTLIQIKKDKTNSRIYGMKVWRMLKMFFITLMFCILLWIVVHYHMNLYS*	1141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1023	1140	CDD	RRM_SF	5	64	-	-
	Mtr1g1023	1140	PANTHER	RNA-DEPENDENT RNA POLYMERASE	2	1126	-	-
	Mtr1g1023	1140	Pfam	RNA dependent RNA polymerase	363	936	IPR007855	GO:0003968
	Mtr1g1023	1140	PANTHER	RNA-DEPENDENT RNA POLYMERASE	2	1126	IPR007855	GO:0003968
	Mtr1g1023	1140	Gene3D	-	1	89	IPR012677	-
	Mtr1g1023	1140	SUPERFAMILY	RNA-binding domain, RBD	3	83	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1023	Mtr-Chr1	11608805	11612918	Proximal

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g1023	1	11608805	11612918	Mtr1g1023	1	11608805	11612918	ECH