Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1021 ATGCCTGCGTCGTTGCAGAGCTCCGGTGAGTTTCCGGCTGGGTTAAGGGTTCTTGTTGTTGATGATGACGTCACTACGTTGAAGATAATTGAACAAATGTCTCTTCGCTGTCATTATCAAGTCACTACATGCTCTGAGGCTACTGTTGCTTTGAAAATTCTGCGGGAAAGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTTTTTTATTAAGCCTGTACGGATGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAAATTTTGAATGAAAATAAGGAACATGATAATTCTGGCAGCATAGAAGATAATGATCGCAATACACAGGGGAATGATGATAATGACAACACTTCTTCTGTTGCTGGTGCAACAAAAGGAATAGTAAAAGAACAAAAAAAGAGGAGCAATTTAAAAGATGAAGATGTTGAGTTGGAGAATGATGATCCATCTGCATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTAAATCAACTAGGACTTGACAAGGCCGTGCCAAAGAGAATACTTGAAATGATGAATGTCCCTGGTCTGACAAGAGAAAATGTTGCAAGTCATTTACAGAAATTTAGGCTTTATTTGAAGAGGTTAAGTGTAGTGGCACATCAACAGAATGGGATGTTAAACACAGTTCATGGGACTATAGAATCCAAGCTGGCTGCTACTGGAAGATATGACATACAGGCTTTGGCTGGTTCTGGCCATGTTTCCCCTGAAACACTTGCAGCTCTTCAGGCGGAGCTCTTAGGTCACCCGGCAACTAACATAATGCCTACAGTGGACCGGACTGCACTAATGCATGCATCTGTACAGGGGACAAAACATTCTCTTGCTGATGATCATGCTGTAGCATGTGGTCAGCCTCTTGTAAAATATCCTTCCAACATTGTCAATAATTTCCCTCAATCCATCTTAAAAGTAGATGATTCATCATCAATATATGGAGCATGGCCGCCATCTAGTACACTCGGGTCAGTCTCAAGTGGAAGGTTAGGCGTTCAGAATAATAACACGCTGGTTGATATATTGCAGCACCAACAACAGCACCAGCATCAGCAAAAACAACAGCAGTCTCAGATACATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCTGCTCAATCTTCTAATACCTTCCAGGCAGTAAATAGTGTTGCTTCTGTCAACAAGGATTGCAGTTTTAGCAGAAATGCCATTATTGATTATAGTCAATCATCACAAAAATCAAGTAATTCATCGAGTTCATCTCAATATCCTGGCGGAGAAACCAGAGCTACCTCCATTTCTCCTCAAATATCCTCTTTTTCAGTAGGATCCAGAAATAACAATATTCAGCAGATTCAAAACTCAACTTTAACATTTGGTGCTGCTAGACCTTTGCCTGGCCTTCTCCCCTTGACACTTAGACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGATGAAGTATGTCTTAGGAATCTAGGATTTGTTGGAAAAGGCACCTGCATACCAAGTTTTGAAAATAAAATCCAATCATCTGCAAATGATTTTAGTCAAATGAAAGTATTCATGGCTAGCAATGGTAACACAGTGAAGGAGGAATTAGAGGAGGAACCAAGTCTTATCAGATATCCAAATGCGAGCCAGCCAGTTCTTCAGAATTATCCATCTCATGATCATTCAAGTGCATTCACTTAA 1881 0.4056 MPASLQSSGEFPAGLRVLVVDDDVTTLKIIEQMSLRCHYQVTTCSEATVALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDFFIKPVRMEELRNIWQHVARKILNENKEHDNSGSIEDNDRNTQGNDDNDNTSSVAGATKGIVKEQKKRSNLKDEDVELENDDPSASKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILEMMNVPGLTRENVASHLQKFRLYLKRLSVVAHQQNGMLNTVHGTIESKLAATGRYDIQALAGSGHVSPETLAALQAELLGHPATNIMPTVDRTALMHASVQGTKHSLADDHAVACGQPLVKYPSNIVNNFPQSILKVDDSSSIYGAWPPSSTLGSVSSGRLGVQNNNTLVDILQHQQQHQHQQKQQQSQIHDQNRSINVQPSCLVVPAQSSNTFQAVNSVASVNKDCSFSRNAIIDYSQSSQKSSNSSSSSQYPGGETRATSISPQISSFSVGSRNNNIQQIQNSTLTFGAARPLPGLLPLTLRQVPYDIKSSDSLDEVCLRNLGFVGKGTCIPSFENKIQSSANDFSQMKVFMASNGNTVKEELEEEPSLIRYPNASQPVLQNYPSHDHSSAFT* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1021 626 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Mtr1g1021 626 Gene3D - 196 259 - -
Mtr1g1021 626 SUPERFAMILY CheY-like 14 135 IPR011006 -
Mtr1g1021 626 MobiDBLite consensus disorder prediction 471 500 - -
Mtr1g1021 626 SMART REC_2 15 127 IPR001789 GO:0000160
Mtr1g1021 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 450 IPR045279 GO:0009736
Mtr1g1021 626 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Mtr1g1021 626 MobiDBLite consensus disorder prediction 138 156 - -
Mtr1g1021 626 CDD REC_typeB_ARR-like 17 131 - -
Mtr1g1021 626 MobiDBLite consensus disorder prediction 173 198 - -
Mtr1g1021 626 MobiDBLite consensus disorder prediction 138 198 - -
Mtr1g1021 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 12 450 - -
Mtr1g1021 626 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Mtr1g1021 626 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Mtr1g1021 626 MobiDBLite consensus disorder prediction 405 424 - -
Mtr1g1021 626 Pfam Myb-like DNA-binding domain 202 250 IPR001005 -
Mtr1g1021 626 Pfam Response regulator receiver domain 17 126 IPR001789 GO:0000160
Mtr1g1021 626 PIRSF RR_ARR_type-B 2 623 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr1g1021 626 Coils Coil 173 193 - -
Mtr1g1021 626 Gene3D - 15 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1021 Mtr-Chr1 11588670 11596468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1021 49 314 Response Regulator Gene Family AT3G16857 53.169 1.05e-89 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr1g1021 Response_reg 2e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1021 1 11588670 11596468 Mtr1g1021 1 11588670 11596468 ECH