Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1011 ATGTCAGCACGACAAATCATCGAAGTACCACAAACACCGCTTCTCCGCTCACACCATGAAGGCAACGGCGGCGGTCGCCGTACTTCCCTCGCTCAGCTACTCGGACGCGCCACCGGACGGAGAGGACCATCTGTCCTGGTACGCGAAACGGCGGCGCGTGAACTCGAAGAGCGTCGTGCCGATTGGGGATACTCGAAGCCAGTGGTAGCGCTTGACATGTCGTGGAACATGGCGTTCGTTGTTGTATCGGCAGTGATGCTTGCGTTCACCGTTGACGAGCGTCCGAACATGCCGATCCGCGTTTGGATCGTAGGTTACGCGTTGCAGTGTTTTGTTCATGTTGTATTGGTGTGGATTGAGTATCACCGCCGTAATAGGAGGGATTCGCGGCAGAGGCAGAGGGAGAGTGATGCTGAATTCAGTTCCGACGGTAACGATAGTGATGACAGCGATGGCGACGTGAACTCGACTCAGTCCAGATTCACCAAGCGATGTGAATCAATAAATACCGGGGTTTCGTTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGACGATATCCTTCTGCAAGATGCTCCCCGCTTGTACTGGTTGGCTGTTGTCTTTTTGGCATTCGATGTCTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCGGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCAAAATACAGATTTCGATTATCAAACAATGAGGAGAAGGATAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACCACCAGTGCATACTTGGCAACTGAACGAATACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGCCCATATGAGGATGGAGTAGAGCTCCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTGAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATAA 1053 0.4957 MSARQIIEVPQTPLLRSHHEGNGGGRRTSLAQLLGRATGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLAFTVDERPNMPIRVWIVGYALQCFVHVVLVWIEYHRRNRRDSRQRQRESDAEFSSDGNDSDDSDGDVNSTQSRFTKRCESINTGVSFLWWMVGFYWVVSGDDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLSNNEEKDSGGAGSMVPIETTSAYLATERILLPEDAECCICLCPYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1011 350 PANTHER TARGET OF ERK KINASE MPK-1 6 350 - -
Mtr1g1011 350 SUPERFAMILY RING/U-box 286 344 - -
Mtr1g1011 350 Pfam Ring finger domain 298 340 IPR001841 -
Mtr1g1011 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 345 IPR013083 -
Mtr1g1011 350 SMART ring_2 299 339 IPR001841 -
Mtr1g1011 350 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 350 - -
Mtr1g1011 350 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g1011 350 MobiDBLite consensus disorder prediction 130 155 - -
Mtr1g1011 350 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1011 Mtr-Chr1 11525316 11529822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1011 12 349 C3H Transcription Factor Family AT1G68070 68.915 1.41e-171 479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1011 1 11525316 11529822 Mtr1g1011 1 11525316 11529822 ECH