Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1006 ATGGCGGATGCTCTCACTGTCATGCCGGCCGCCGTGCTCCGTAACCTCGCCGATAAGCTCTACGAAAAACGCAAAAATGCTGCACTCGAGGTTGAGGGGATTGTGAAGCAGCTTGCTTCTGCTGGTGATCATGATAAGATTACTGCTGTCATTACTTTGTTGACTACGGAATTTACTTACTCGCCGCAAGCCAATCATCGCAAGGGAGGGTTGATTAGTTTAGCTGCTGCTACTGTTGGTTTGACTAATGAAGCTGCTCAACATCTCGAGCAAATTGTGCCTCCTGTATTAAATTCTTTCTCTGACCAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCACTATACAACATTGCTAAGGTTGTGAGAGGAGACTTTATTGTATTCTTCAACCAGATCTTTGATGCCTTATGCAAGCTTTCTGCAGATTCAGATGCTAATGTACAAAGTGCTGCACATCTCTTAGATCGACTTGTGAAGGATATTGTGACCGAAAGTGATCAGTTCAGTATTGAAGAATTTATACCATTATTGAGGGAGCGCATGAATGTACTAAATCCATATGTCCGCCAGTTTTTGGTAGGATGGATTACTGTATTGGATAGTGTTCCAGATATTGATATGCTGGGTTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGTTGAGTGATTCAAGTCATGAAATACGTCAACAAGCTGATTCAGCTCTTTCTGAGTTTCTTCAAGAGATAAAGAACTCACCAATAAATGAGTTTGTCAAACTTGGTGGAGACCAGCTTGTTCCATACTATGCTGACATTCTTGGAGCCATTTTGCCTTGCATATCCGATAAAGAAGAGAAAATTAGAGTGGTTGCTCGGGAAACCAATGAAGAGCTACGAGCAATCAATGCCGATCCAGCTGAAGCGTTTGATGTAGGAGCAATCCTCTCCATTGCAAGAAGGCAACTCTCTAGTGAATGGGAGGCTACTCGAATCGAAGCTTTGCATTGGATATCAACCCTGTTAAACAGACATCGTATTGAGGTTTTGACATACCTAAATGACATATTTGACACCCTACTCAAAGCACTTTCAGATCCATCTGATGAGGTTGTTCTTTTAGTTCTTGATGTTCATGCATGCATTGCAAGAGATCCTCAGCACTTCCGGCAGCTTGTCGTTTTCCTTGTGCACAATTTCAGACTAGATAATTCTCTTTTGGAGAAGCGTGGTGCTTTGATAATCCGTCGCCTTTGTGTGCTTTTGAATGCCGAGAGAGTCTACCGGGAACTTTCTACAATATTAGAAGGAGAATCTGATTTGGATTTTGCATCAATTATGGTTCAGGCTTTGAATTTGATCTTACTTACATCATCAGAATTGTCTGAGATTCGAGATCTTTTAAAGCAATCACTGGTAAATCCTGCCGGGAAGGACTTGTATATTTCTTTGTATGCCTCTTGGTGTCATTCTCCAATGGCAATTATAAGTCTCTGCTTTGTAGCTCAGACTTACCGACATGCAAGTGCTGTGATTCAATCTCTGGAGGAGGAGGATATAAATGTGAAGTTTTTGGTCCAACTGGATAAATTGATTCGCTTGCTGGAAACTCCAATCTTTGCTTATCTTAGATTGCAGCTTCTCGATCCTGCAAGATATTTATGGCTATTCAAAGCATTGTATGGTCTTCTGATGTTGCTACCTCAGCAAAGTGCAGCCTTTAAGATACTAAAGACTCGTTTAAAGGCTGTGCCGTCGTATTCTTTCAATCGTGCGCAACTGAATAGAGAGCCTTCTGGGGATTATTACCAATTTCTTCCTCAGATGCCTGATGGAACAAAAGAGGATGGTGATGTAACTGAAGATGGTGGGAGCTCATATAATGCAATTAACTTTGCTGCAAGGTTACAACAGTTTCAGAAAATGCAGCAACAACATCGGGTACACACTAAATCACGAAGAACGTCACGCAGTTTATCCACTTCATTACCAAAGGTTGCTGGCCTTAGTTTGTCCACTTCATTATCAAAGGAGGCACAACGAGAGGAAGAGCCACCGAAACCTCAGTCTATTGATCTTAATGTCCCTCCTTCAAGATCAAGGAGAAATTCAGGGCAACTACAACTATAA 2115 0.4147 MADALTVMPAAVLRNLADKLYEKRKNAALEVEGIVKQLASAGDHDKITAVITLLTTEFTYSPQANHRKGGLISLAAATVGLTNEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAINADPAEAFDVGAILSIARRQLSSEWEATRIEALHWISTLLNRHRIEVLTYLNDIFDTLLKALSDPSDEVVLLVLDVHACIARDPQHFRQLVVFLVHNFRLDNSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSEIRDLLKQSLVNPAGKDLYISLYASWCHSPMAIISLCFVAQTYRHASAVIQSLEEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLDPARYLWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSFNRAQLNREPSGDYYQFLPQMPDGTKEDGDVTEDGGSSYNAINFAARLQQFQKMQQQHRVHTKSRRTSRSLSTSLPKVAGLSLSTSLSKEAQREEEPPKPQSIDLNVPPSRSRRNSGQLQL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1006 704 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
Mtr1g1006 704 PANTHER PROTEIN VAC14 HOMOLOG 250 660 - -
Mtr1g1006 704 PANTHER PROTEIN VAC14 HOMOLOG 4 249 - -
Mtr1g1006 704 Pfam Vacuolar protein 14 C-terminal Fig4p binding 400 579 IPR021841 -
Mtr1g1006 704 PANTHER TAX1 BINDING PROTEIN-RELATED 250 660 IPR026825 GO:0006661|GO:0070772
Mtr1g1006 704 PANTHER TAX1 BINDING PROTEIN-RELATED 4 249 IPR026825 GO:0006661|GO:0070772
Mtr1g1006 704 MobiDBLite consensus disorder prediction 641 704 - -
Mtr1g1006 704 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Mtr1g1006 704 MobiDBLite consensus disorder prediction 688 704 - -
Mtr1g1006 704 SUPERFAMILY ARM repeat 12 501 IPR016024 -
Mtr1g1006 704 MobiDBLite consensus disorder prediction 650 671 - -
Mtr1g1006 704 Gene3D - 7 125 IPR011989 -
Mtr1g1006 704 Gene3D - 126 255 IPR011989 -
Mtr1g1006 704 Gene3D - 256 450 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1006 Mtr-Chr1 11486600 11495531 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1006 1 11486600 11495531 Mtr1g1006 1 11486600 11495531 ECH