Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1005 ATGGATTCAAAGTCACTATGCTTCATAACCCATCAAGATATTTTCAATGTGGTTCGATCTGGTGATCTTGAAGGACTCAAAGAAGTGCTGAAATATGTTAACAAAGGTGAATCCTCAAATGGGCCATCACCAATTTCTGAATTCTTGTCCATGCAGAATGATGCTGGGGAAACGTTATTGTATATAGCTGCAGAAAATGGTGTTAAGGATTTGTTCAGCTTCTTGTTAAGGTTATGTGATTTGGAGATACTCAAAATCAGGTCTAAATCTGATATGAATGCATTTCACGTTGCAGCTAAGCGTGGCCATTTGGAAATTGTGAGGGAGATTTTGAGTACTTGGCCTGAGGCTTGTAAGTTATGCGACTCTTCGAACACTAGTCCACTTTATTTAGCTGCTGTTCAAGACCATTTGGATGTGGTGAATGCTATTTTGGATGTTGATGTCAGTTCAATGATGATAGTAAGGAAAAATGGCAAAACTGCGTTGCACAATGCGGCTAGGTATGGCATTCTCCGCATCGTAAAAGCACTTATTGCTAGGGACTCAGCAATTGTTTGCATCAAAGATAAAAAGGGTCAAACAGCACTTCATATGGCTGTAAAAGGACAGTGTACTTCAGTAGTGGAGGAGATATTACAAGCTGACCCGATGGTATTAAACGAAAAAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACTCGGAAAGCTCGTTCGCAGATAGTGAGCTTTTTGTTAAGCTATGCATCTATGAATGTCAATGCAATCAATAATCAGCAAGAAACAGCCTTGGATTTGGCAGATAAACTTCCGTACGGAGATTCATCTCTGGAAATCAAGGAAGCCCTTTCAGACTGTGGTGCCAAGAATGCAAGGAATATAGGCAAAGTGAATGAAGCCATGGAACTTAAAAGAGTCGTGAGTGATATAAAGCACGAGGTGCAATCACAACTCGTACAGAATGAAAAAACTCGCAAACGGGTTTCTGGTATAGCTAAAGAATTGAGGAAAATTCATAGGGAAGCAATCCAAAACACCATAAATTCTGTCACAGTAGTTGCTGTCCTTTTTGCATCAATAGCATTCATGGCTTTGTTCAGTTTGCCAGGTCAATATAGAAAGCAACAACCGGAGGCAGGGAAGGCGAATATAGCTCACGAAGTTGCTTTCAGTGTTTTCTGTCTTTTGAATGCAACGTCTCTTTTCATTTCTCTTGCGGTTGTCGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAGACAGATTGTGTCGGTGATTAACAAGCTAATGTGGACGGCTTGTGCGTGCACTTGTGGAGCTTTTCTCGCAATAGCTTTTGTGGTTGTTGGAAAGGAAAGATGGATGGCTATTACTGTAACTGTTTTGGGAACACCGATTCTAGTTGGGACTCTAGCATACTTGTGCTACTTTGTGTTCCGGCGACATTTTGGATTCCAAAGTGAATCCCAAAGAGTACTATCTAAGAGACCAAGTGGAAGCAAATCACTCTCGTGGTCTTACTCTGCACATATATCAGATGAGGAGGAATATAATTCTGATGTTGAGAAGATCTATGCTCTTTGA 1596 0.4085 MDSKSLCFITHQDIFNVVRSGDLEGLKEVLKYVNKGESSNGPSPISEFLSMQNDAGETLLYIAAENGVKDLFSFLLRLCDLEILKIRSKSDMNAFHVAAKRGHLEIVREILSTWPEACKLCDSSNTSPLYLAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRIVKALIARDSAIVCIKDKKGQTALHMAVKGQCTSVVEEILQADPMVLNEKDKKGNTALHMATRKARSQIVSFLLSYASMNVNAINNQQETALDLADKLPYGDSSLEIKEALSDCGAKNARNIGKVNEAMELKRVVSDIKHEVQSQLVQNEKTRKRVSGIAKELRKIHREAIQNTINSVTVVAVLFASIAFMALFSLPGQYRKQQPEAGKANIAHEVAFSVFCLLNATSLFISLAVVVVQITLVAWDTRAQRQIVSVINKLMWTACACTCGAFLAIAFVVVGKERWMAITVTVLGTPILVGTLAYLCYFVFRRHFGFQSESQRVLSKRPSGSKSLSWSYSAHISDEEEYNSDVEKIYAL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1005 531 ProSiteProfiles Ankyrin repeat profile. 226 248 IPR002110 GO:0005515
Mtr1g1005 531 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 531 - -
Mtr1g1005 531 ProSiteProfiles Ankyrin repeat region circular profile. 158 185 - -
Mtr1g1005 531 Pfam Ankyrin repeats (3 copies) 190 255 IPR002110 GO:0005515
Mtr1g1005 531 Pfam Ankyrin repeats (3 copies) 60 146 IPR002110 GO:0005515
Mtr1g1005 531 Gene3D - 151 305 IPR036770 -
Mtr1g1005 531 SUPERFAMILY Ankyrin repeat 14 271 IPR036770 -
Mtr1g1005 531 Pfam Domain of unknown function 342 451 IPR026961 -
Mtr1g1005 531 SMART ANK_2a 192 222 IPR002110 GO:0005515
Mtr1g1005 531 SMART ANK_2a 226 256 IPR002110 GO:0005515
Mtr1g1005 531 SMART ANK_2a 90 119 IPR002110 GO:0005515
Mtr1g1005 531 SMART ANK_2a 55 83 IPR002110 GO:0005515
Mtr1g1005 531 SMART ANK_2a 158 187 IPR002110 GO:0005515
Mtr1g1005 531 SMART ANK_2a 124 154 IPR002110 GO:0005515
Mtr1g1005 531 ProSiteProfiles Ankyrin repeat region circular profile. 226 248 - -
Mtr1g1005 531 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 531 - -
Mtr1g1005 531 Gene3D - 6 150 IPR036770 -
Mtr1g1005 531 ProSiteProfiles Ankyrin repeat profile. 158 185 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1005 Mtr-Chr1 11481672 11485336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1005 1 531 Miscellaneous Gene Families AT2G01680 67.103 0.0 712
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1005 1 11481672 11485336 Mtr1g1005 1 11481672 11485336 ECH