Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0997 ATGATCCAAAACATTTTGAAACGATGTCATCATTTTCACTACAACCCAACAATAACAATTTTGAATGGCAAAACGTTCCACACTTCACTCATTCACACTCTTTCCAATCCAAACCAAAACGAGTTTGATGAACCCAAATGGAAGAATCAACAACTACAAGAAAATCCTGCGTTTCAGATTTCTCATCCATGGCCTGAATGGGTATACTTGATGGAATACTTGATCAAAAAGGGTCATTTTCATGCAGAGGGTAACCCATTTGAAAATCCTCCTTTGGGTGCAAAAGAATCCAATCTTATTAGAACTGCTTGTCTCAATTTTGGTAGAGACCATGCTCATATTTTAAGGTTTTTGTCGCGAAAAGATATAGGAGTTATTGTAACATTTGGATGTCCAAGCTTAGATAGAAAAGTGGTCAACTCAGGAAAGCGTCTGAGAGCATATGCAGGCATTGATGAGGGAAATGTGTGCAGCTCGTGTAATTTGAGGGGGGACTGTGAAAGGGCATTTGTGAAAGCACGCGAAGATGAAGGTGGAAGAACAGTCGATGTTATGCGTATTATTTTGACTTATGGACTTGACCCAATAATCGGTTCAGTGGATAATAAACCATCTCTTAATAAAATGGTAAAAGAATCTGTTAGAAGACTACTGAAAAAGATAGTAGAGTGCGGTACTGAAGAAAACCCCTCTACTTTTCCAGACATCACAGAAGATGCTGTCGAAGAAGTTCATCCGAATCCTCTAGATAAGGGCAAAAAAGATGTTCCATTGAAGCAAGGCGATTGGCTTTGCCCCAAATGCAATTTCCACAACTTCGCTAGAAATATCAAATGCTTACACTGTGACAACTTCTGCGAGGAAAAAATCAAGCAATTGAAGGAGGATAATAATCACTTACCTTTGAAGAAGGGAGACTGGATATGTGACAAATGCAACTTCCTCAATTTTGCAAAGAATACAAGATGTTTGCAATGTAAAGAGGGGCCTTCAAACCGCCGCATTAATCCAGGGGAGTGGGAATGCGAGTCGTGCAACTACATCAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGATCATAGAAGACCTAAGGTGTCAAATGCTTCAAACTCTTCTCCTCAATCTCAGGGAGAAGATAGAAACCACTATGAAAAAAGCAGACCGACTTTTGCAGGATATTGGTTTGATGGTAACAAAGAATCACCAATGGCGTCAGAAAGAAAGAGCAGGAACAGAGATTCACATAAGTGGAGATTTGTAGAAGAAGGAATTGAAAATCACAAGTACTTAGAGAACTCAAATGATAGTTCAGAATATTTAGATTTTCCTATTGCTGGAGGTAAGACTAGCATGTCTGAGCCACAAAGGGGAGAAGTATATAAGAACGAGTTGCCAAATCAGTCCAAAAGGCATGCGTGGCAAAGTGAAGCCGATGATGAGTTTTGCTCTTCTGATAACCCGAGTACCGATGATGATGAGATGGCCGAATGGTTTGGAAAGGGTAAGAATTCAAGGTAG 1521 0.3978 MIQNILKRCHHFHYNPTITILNGKTFHTSLIHTLSNPNQNEFDEPKWKNQQLQENPAFQISHPWPEWVYLMEYLIKKGHFHAEGNPFENPPLGAKESNLIRTACLNFGRDHAHILRFLSRKDIGVIVTFGCPSLDRKVVNSGKRLRAYAGIDEGNVCSSCNLRGDCERAFVKAREDEGGRTVDVMRIILTYGLDPIIGSVDNKPSLNKMVKESVRRLLKKIVECGTEENPSTFPDITEDAVEEVHPNPLDKGKKDVPLKQGDWLCPKCNFHNFARNIKCLHCDNFCEEKIKQLKEDNNHLPLKKGDWICDKCNFLNFAKNTRCLQCKEGPSNRRINPGEWECESCNYINFRRNMVCLKCDHRRPKVSNASNSSPQSQGEDRNHYEKSRPTFAGYWFDGNKESPMASERKSRNRDSHKWRFVEEGIENHKYLENSNDSSEYLDFPIAGGKTSMSEPQRGEVYKNELPNQSKRHAWQSEADDEFCSSDNPSTDDDEMAEWFGKGKNSR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0997 506 ProSitePatterns Zinc finger RanBP2-type signature. 340 359 IPR001876 -
Mtr1g0997 506 SMART zf_4 305 329 IPR001876 -
Mtr1g0997 506 SMART zf_4 261 285 IPR001876 -
Mtr1g0997 506 SMART zf_4 338 362 IPR001876 -
Mtr1g0997 506 Gene3D - 331 366 - -
Mtr1g0997 506 Gene3D - 294 330 - -
Mtr1g0997 506 Gene3D - 250 288 - -
Mtr1g0997 506 Pfam Zn-finger in Ran binding protein and others 338 360 IPR001876 -
Mtr1g0997 506 Pfam Zn-finger in Ran binding protein and others 259 284 IPR001876 -
Mtr1g0997 506 Pfam Zn-finger in Ran binding protein and others 303 327 IPR001876 -
Mtr1g0997 506 MobiDBLite consensus disorder prediction 445 506 - -
Mtr1g0997 506 ProSiteProfiles Zinc finger RanBP2 type profile. 259 288 IPR001876 -
Mtr1g0997 506 ProSitePatterns Zinc finger RanBP2-type signature. 307 326 IPR001876 -
Mtr1g0997 506 SUPERFAMILY Ran binding protein zinc finger-like 296 328 IPR036443 -
Mtr1g0997 506 ProSiteProfiles Zinc finger RanBP2 type profile. 303 332 IPR001876 -
Mtr1g0997 506 PANTHER ZINC FINGER PROTEIN 280 505 - -
Mtr1g0997 506 PANTHER ZINC FINGER PROTEIN 13 239 - -
Mtr1g0997 506 PANTHER ZINC FINGER PROTEIN 249 282 - -
Mtr1g0997 506 ProSitePatterns Zinc finger RanBP2-type signature. 263 282 IPR001876 -
Mtr1g0997 506 SUPERFAMILY Ran binding protein zinc finger-like 329 365 IPR036443 -
Mtr1g0997 506 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 249 282 - -
Mtr1g0997 506 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 280 505 - -
Mtr1g0997 506 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 13 239 - -
Mtr1g0997 506 SUPERFAMILY Ran binding protein zinc finger-like 252 285 IPR036443 -
Mtr1g0997 506 MobiDBLite consensus disorder prediction 364 415 - -
Mtr1g0997 506 ProSiteProfiles Zinc finger RanBP2 type profile. 336 365 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0997 Mtr-Chr1 11411406 11415116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0997 53 364 EF-hand Containing Proteins AT1G55040 38.643 5.38e-63 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0997 1 11411406 11415116 Mtr1g0997 1 11411406 11415116 ECH