Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00459 ATGGATGGAAGTTGGGGTGAGGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGGGAAGAAGAAAAGGGTGGTTACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCGGTGACACCTTCTTGTCAAGTTGATAACTGTAATGCTGATCTAAGTGTTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGGAGGCGTTTGGCTGGACATAACGAGAGGCGTCGCAAAAGTGCGTCTGAATATCACTGA 426 0.4178 MDGSWGEGKRIYEYREENEYEVEVEEEEDVSYGDDGKKKRVVTDHLYNKKGSKAGGSVTPSCQVDNCNADLSVAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHEVSEFDDLKRSCRRRLAGHNERRRKSASEYH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00459 141 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
Mepo6g00459 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 137 IPR044817 GO:0003677
Mepo6g00459 141 PIRSF SBP 6 141 IPR017238 GO:0003677|GO:0003700|GO:0009908
Mepo6g00459 141 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Mepo6g00459 141 SUPERFAMILY SBT domain 60 139 IPR036893 GO:0003677|GO:0005634
Mepo6g00459 141 Pfam SBP domain 62 135 IPR004333 GO:0003677
Mepo6g00459 141 FunFam Squamosa promoter-binding-like protein 14 53 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00459 Mepo-Chr6 4711318 4713962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00459 41 139 SBP-box Gene Family AT1G53160 62.626 5.75e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo6g00459 SBP 1.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00459 6 4711318 4713962 Mepo6g00459 6 4711318 4713962 ECH
Mepo6g00459 6 4711318 4713962 Mepo1g02960 1 32767586 32769302 ECH
Mepo1g02960 1 32767586 32769302 Mepo6g00459 6 4711318 4713962 ECH
Mepo2g03256 2 42190407 42195478 Mepo6g00459 6 4711318 4713962 PCT